CX070278

Overview
NameCX070278
Unique NameCX070278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX_CTEID (Interferon-induced GTP-binding protein Mx OS=Ctenopharyngodon idella GN=mx PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.230e-13
Identity = 55/158 (34.81%), Postives = 79/158 (50.00%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE--------GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRG+GIVTR PLVL+L K+ +        G   Y +      K+  D A +   +        G  + IS   I L I S +V +LTLIDLPG+ +VA   QP  I + I++++  YI++   I L + P
Sbjct:   42 NLPAIAVIGDQSSGKSSVLEALSGVA-LPRGTGIVTRCPLVLKLKKISKDNNWHQWHGLMSYRD----QTKKLKDPAEIENAVLKAQTVLAGTGEGISHEMITLEIQSSDVPDLTLIDLPGIARVATGNQPKDIEKQIKDLIEKYIKRQETISLVVVP 194          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX2_BUBBU (Interferon-induced GTP-binding protein Mx2 OS=Bubalus bubalis GN=MX2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.097e-13
Identity = 55/146 (37.67%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIIL 749
            +LPAIA            LE++ G   LPRGSGI+TR PLVL+L K E        + +I ++   + + V  EI+   +   G  + IS   I+L + SP+V +LTLIDLPG+T+VAVE QP  I   I+ ++    E  N +++
Sbjct:  114 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIITRCPLVLKLTKRECEWTGKITYRNITQQ-LQNPSEVEWEIRRAQNIIAGNGRGISHELINLEVTSPDVPDLTLIDLPGITRVAVENQPQDIGLQIKALIIQRQETINLVVV 257          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX_CHICK (Interferon-induced GTP-binding protein Mx OS=Gallus gallus GN=MX PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.103e-13
Identity = 52/151 (34.44%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  315 LPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK--RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            LPAIA            LE++ G   LPR  G++TR PL L+L K+    +E+   ++      +  + + V+K I+   D   G    IS   I L I+SP+V +LTLIDLPG+ + AV  QP    Q I+ +++ YI     II+ + P
Sbjct:  114 LPAIAVIGDRNSGKSSVLEALSGVA-LPRDKGVITRCPLELKLKKMT-APQEWKGVIYYRNTEIQLQNASEVKKAIRKAQDIVAGTNGSISGELISLEIWSPDVPDLTLIDLPGIAREAVGNQPQDNGQQIKTLLKKYIGCKETIIVVVVP 262          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MXC_DANRE (Interferon-induced GTP-binding protein MxC OS=Danio rerio GN=mxc PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 51/158 (32.28%), Postives = 76/158 (48.10%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGS--------REYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRG GIVTR PL+L+L K+            ++  E L  P         +   +        G  + IS   I L I S +V +LTLIDLPG+ +VA   QP+ I + I++++  +I++   I L + P
Sbjct:   42 NLPAIAVIGDQSSGKSSVLEALSGVA-LPRGIGIVTRCPLILKLKKITRDKNWSGLLTYKDQTEILKEP-------TGIENAVLKAQIALAGTGEGISHEMITLEIQSCDVPDLTLIDLPGIARVATGNQPEDIEKQIKDLIEKFIKRQETISLVVVP 191          
The following BLAST results are available for this feature:
BLAST of CX070278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
MX_CTEID1.230e-1334.81Interferon-induced GTP-binding protein Mx OS=Cteno... [more]
MX2_BUBBU2.097e-1337.67Interferon-induced GTP-binding protein Mx2 OS=Buba... [more]
MX_CHICK6.103e-1334.44Interferon-induced GTP-binding protein Mx OS=Gallu... [more]
MXC_DANRE1.503e-1132.28Interferon-induced GTP-binding protein MxC OS=Dani... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15H01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H01-P1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070278 ID=CX070278; Name=CX070278; organism=Citrus sinensis; type=EST; length=761bp
CCTCCCCACTTTCTTTTAAATTTCAAACTCTCTCTCTCTCTCTCTCTCTC
TCTCGTTTGTCCTACCGGCGAAGCAAAAACTAATCACACAGATCTCCTCT
GAACGTCGCCGTTTCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCT
GACAGCTGAGATCATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACT
TAGCTGCGAGAGAAAATGGAGAACTTGATTTCTTTGGTTAACAAAATACA
AAGAGCTTGTACGGCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTA
CTCTTTGGGACTCTCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCT
GGAAAGTCATCAGTGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCG
TGGATCTGGTATCGTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAAC
TCGAAGAAGGCAGCAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAA
AGATTTACCGATTTTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGA
TAGAGAGACTGGTCGTACCAAACAAATCTCGAGTGTACCAATTCATCTCA
GCATATATTCCCCTAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGG
CTCACAAAAGTAGCAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATAT
TGAGAATATGGTTCGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTG
CAATTTCACCT
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