CX070272

Overview
NameCX070272
Unique NameCX070272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: KDRA_SALG2 (2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yfaU PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.179e-31
Identity = 70/190 (36.84%), Postives = 116/190 (61.05%), Query Frame = 3
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMM 827
            K  L+  +T  GL+L S +  +AEI+  +GYD++++D EH P  + D    L A+A   +  ++RL E      K+ LD+G Q ++ PM+D+ E A++ VS  R+PP G RG   +V RA+ +G  + Y++   E L ++ QVES+  ++  + I  V+G+D V +GP DLSAS+GY  + GH +V+ ++
Sbjct:   10 KEGLREGDTQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTVQDLYHQLQAIAPYASQPVIRLIEGSKALIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPLGQRGVGASVARAARWGRIDNYMAQANESLCLLVQVESKVALENLDAILEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRII 199          
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: KDRA_ECO57 (2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O157:H7 GN=yfaU PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.539e-31
Identity = 70/193 (36.27%), Postives = 116/193 (60.10%), Query Frame = 3
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVA 836
            K RL+  E   GL+L S +  +AEI+  +GYD++++D EH P  I D    L A+A   +  ++R  E      K+ LD+G Q ++ PM+D+ + A++ VS  R+PP G RG   +V RA+ +G  E Y++   + L ++ QVES+  +   ++I  V+G+D V +GP DLSAS+GY  + GH +V+ ++  +
Sbjct:   10 KERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTADQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETS 202          
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: KDRA_ECOUT (2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain UTI89 / UPEC) GN=yfaU PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.010e-31
Identity = 70/193 (36.27%), Postives = 116/193 (60.10%), Query Frame = 3
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVA 836
            K RL+  E   GL+L S +  +AEI+  +GYD++++D EH P  I D    L A+A   +  ++R  E      K+ LD+G Q ++ PM+D+ + A++ VS  R+PP G RG   +V RA+ +G  E Y++   + L ++ QVES+  +   ++I  V+G+D V +GP DLSAS+GY  + GH +V+ ++  +
Sbjct:   10 KERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASHPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTADQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETS 202          
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: KDRA_ECOL6 (2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O6 GN=yfaU PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.010e-31
Identity = 70/193 (36.27%), Postives = 116/193 (60.10%), Query Frame = 3
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVA 836
            K RL+  E   GL+L S +  +AEI+  +GYD++++D EH P  I D    L A+A   +  ++R  E      K+ LD+G Q ++ PM+D+ + A++ VS  R+PP G RG   +V RA+ +G  E Y++   + L ++ QVES+  +   ++I  V+G+D V +GP DLSAS+GY  + GH +V+ ++  +
Sbjct:   10 KERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASHPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTADQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETS 202          
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: KDRA_ECOK1 (2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O1:K1 / APEC GN=yfaU PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.010e-31
Identity = 70/193 (36.27%), Postives = 116/193 (60.10%), Query Frame = 3
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVA 836
            K RL+  E   GL+L S +  +AEI+  +GYD++++D EH P  I D    L A+A   +  ++R  E      K+ LD+G Q ++ PM+D+ + A++ VS  R+PP G RG   +V RA+ +G  E Y++   + L ++ QVES+  +   ++I  V+G+D V +GP DLSAS+GY  + GH +V+ ++  +
Sbjct:   10 KERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASHPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTADQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETS 202          
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: KDRA_ECO81 (2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O81 (strain ED1a) GN=yfaU PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.010e-31
Identity = 70/193 (36.27%), Postives = 116/193 (60.10%), Query Frame = 3
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVA 836
            K RL+  E   GL+L S +  +AEI+  +GYD++++D EH P  I D    L A+A   +  ++R  E      K+ LD+G Q ++ PM+D+ + A++ VS  R+PP G RG   +V RA+ +G  E Y++   + L ++ QVES+  +   ++I  V+G+D V +GP DLSAS+GY  + GH +V+ ++  +
Sbjct:   10 KERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASHPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTADQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETS 202          
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: KDRA_ECO45 (2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yfaU PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.010e-31
Identity = 70/193 (36.27%), Postives = 116/193 (60.10%), Query Frame = 3
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVA 836
            K RL+  E   GL+L S +  +AEI+  +GYD++++D EH P  I D    L A+A   +  ++R  E      K+ LD+G Q ++ PM+D+ + A++ VS  R+PP G RG   +V RA+ +G  E Y++   + L ++ QVES+  +   ++I  V+G+D V +GP DLSAS+GY  + GH +V+ ++  +
Sbjct:   10 KERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASHPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTADQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETS 202          
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: KDRA_SHISS (2-keto-3-deoxy-L-rhamnonate aldolase OS=Shigella sonnei (strain Ss046) GN=yfaU PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.625e-31
Identity = 69/193 (35.75%), Postives = 116/193 (60.10%), Query Frame = 3
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVA 836
            K RL+  E   GL+L S +  +AEI+  +GYD++++D EH P  I D    L A+A   +  ++R  E   +  K+ LD+G Q ++ PM+D+ + A++  S  R+PP G RG   +V RA+ +G  E Y++   + L ++ QVES+  +   ++I  V+G+D V +GP DLSAS+GY  + GH +V+ ++  +
Sbjct:   10 KERLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKSLIKQVLDIGAQTLLIPMVDTADQARQVASATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETS 202          
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: KDRA_SHIBS (2-keto-3-deoxy-L-rhamnonate aldolase OS=Shigella boydii serotype 4 (strain Sb227) GN=yfaU PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.478e-31
Identity = 69/193 (35.75%), Postives = 116/193 (60.10%), Query Frame = 3
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVA 836
            K RL+  E   GL+L S +  +AEI+  +GYD++++D EH P  I D    L A+A   +  ++R  E   +  K+ LD+G Q ++ PM+D+ + A++  S  R+PP G RG   +V RA+ +G  E Y++   + L ++ QVES+  +   ++I  V+G+D V +GP DLSAS+GY  + GH +V+ ++  +
Sbjct:   10 KERLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKSLIKQVLDIGAQTLLIPMVDTADQARQVSSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETS 202          
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: KDRA_SALTY (2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella typhimurium GN=yfaU PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.639e-31
Identity = 69/190 (36.32%), Postives = 115/190 (60.53%), Query Frame = 3
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMM 827
            K  L+  +T  GL+L S +  +AEI+  +GYD++++D EH P  + D    L A+A   +  ++R  E      K+ LD+G Q ++ PM+D+ E A++ VS  R+PP G RG   +V RA+ +G  + Y++   E L ++ QVES+  ++  + I  V+G+D V +GP DLSAS+GY  + GH +V+ ++
Sbjct:   10 KEGLRKGDTQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTVQDLYHQLQAIAPYASQPVIRPIEGSKALIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPLGQRGVGASVARAARWGRIDNYMAQANESLCLLVQVESKVALENLDAILEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRII 199          
The following BLAST results are available for this feature:
BLAST of CX070272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
KDRA_SALG21.179e-3136.842-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella... [more]
KDRA_ECO571.539e-3136.272-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichi... [more]
KDRA_ECOUT2.010e-3136.272-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichi... [more]
KDRA_ECOL62.010e-3136.272-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichi... [more]
KDRA_ECOK12.010e-3136.272-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichi... [more]
KDRA_ECO812.010e-3136.272-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichi... [more]
KDRA_ECO452.010e-3136.272-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichi... [more]
KDRA_SHISS2.625e-3135.752-keto-3-deoxy-L-rhamnonate aldolase OS=Shigella s... [more]
KDRA_SHIBS4.478e-3135.752-keto-3-deoxy-L-rhamnonate aldolase OS=Shigella b... [more]
KDRA_SALTY7.639e-3136.322-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15G10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15G10-N19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070272 ID=CX070272; Name=CX070272; organism=Citrus sinensis; type=EST; length=845bp
CTGAAACTGAGACAATTACAAAAGCAACCATGACCACGCTCACTTGCTCG
GGCTCCGGCACTGCCGCCACTGTCGCCAAGCTTGCACAAAATAAAATCAG
TTCATTTCCAAAAGCACCCTTGTTCACCCTCAACGGCAACAAATCGAAAA
TCGTTTTCCCAAAACTGAAATTGACCCCCTCAGTCTCACGCTCACCCTCG
GATCTGTCGCCAGGCGATCCCCTTTCCCCATCTCCATCACCCTCGCCCGA
ATCACTCAAGTATCGCCTCCAAAGCAACGAAACCCTGTACGGACTCTTCC
TCCTCTCTTTCTCCCCAACTCTTGCCGAAATTTCGGGCCTGGCCGGTTAC
GATTTCGTCGTCGTAGACATGGAGCACGGCCCTGGCGGCATTTCCGATGC
TCTCGCTTGCCTTCACGCTCTTGCCGCCACGGGGACGCCGGCCATTCTGC
GGCTCCCTGAAAGTTGCCCAACTTGGGCTAAAAAGGCCCTCGATCTGGGC
CCACAAGGGGTCATGTTCCCTATGATTGACTCCCCAGAAGCCGCCAAGGA
AGCGGTGTCGTATTGCCGGTTCCCGCCTTCTGGAGTGCGGGGATCCGCTC
ACACGGTGGTGAGAGCGTCCGGTTACGGGATTGATGAGGGATACTTGAGT
AATTACGAGGAGGAGTTGTTGATTATGTGCCAGGTGGAGAGCGAGGAAGG
CGTCAAGCGAGCCGAAGACATCGCGGCGGTTGATGGGGTTGACTGCGTGC
AAATGGGACCGTTGGATTTGAGTGCGAGTATGGGGTACTTGTGGGACCCA
GGGCACAGGAAGGTGAGGGAGATGATGAGGGTGGCGGAGAAAGGG
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