CX070272

Overview
NameCX070272
Unique NameCX070272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: GARL_ECOK1 (5-keto-4-deoxy-D-glucarate aldolase OS=Escherichia coli O1:K1 / APEC GN=garL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.004e-27
Identity = 63/191 (32.98%), Postives = 112/191 (58.64%), Query Frame = 3 
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMR 830
            K  L + +   G +    +P   E+ GLAG+D++V+D EH P  IS  +  L AL  + +  ++R+P + P   K+ LD+G    + P +++ E A++AV+  R+PP G+RG      RA+ +G    Y +   + + I+ Q+ES++GV   + IAA +GVD + +GP DL+A++G+L +  H  V++ ++
Sbjct:   11 KAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAEQAVASTRYPPEGIRG-VSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQ 200
[Close]
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: GARL_ECO8A (5-keto-4-deoxy-D-glucarate aldolase OS=Escherichia coli O8 (strain IAI1) GN=garL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.004e-27
Identity = 63/191 (32.98%), Postives = 112/191 (58.64%), Query Frame = 3 
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMR 830
            K  L + +   G +    +P   E+ GLAG+D++V+D EH P  IS  +  L AL  + +  ++R+P + P   K+ LD+G    + P +++ E A++AV+  R+PP G+RG      RA+ +G    Y +   + + I+ Q+ES++GV   + IAA +GVD + +GP DL+A++G+L +  H  V++ ++
Sbjct:   11 KAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAEQAVASTRYPPEGIRG-VSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQ 200
[Close]
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: GARL_ECO7I (5-keto-4-deoxy-D-glucarate aldolase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=garL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.004e-27
Identity = 63/191 (32.98%), Postives = 112/191 (58.64%), Query Frame = 3 
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMR 830
            K  L + +   G +    +P   E+ GLAG+D++V+D EH P  IS  +  L AL  + +  ++R+P + P   K+ LD+G    + P +++ E A++AV+  R+PP G+RG      RA+ +G    Y +   + + I+ Q+ES++GV   + IAA +GVD + +GP DL+A++G+L +  H  V++ ++
Sbjct:   11 KAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAEQAVASTRYPPEGIRG-VSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQ 200
[Close]
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: GARL_ECO5E (5-keto-4-deoxy-D-glucarate aldolase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=garL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.004e-27
Identity = 63/191 (32.98%), Postives = 112/191 (58.64%), Query Frame = 3 
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMR 830
            K  L + +   G +    +P   E+ GLAG+D++V+D EH P  IS  +  L AL  + +  ++R+P + P   K+ LD+G    + P +++ E A++AV+  R+PP G+RG      RA+ +G    Y +   + + I+ Q+ES++GV   + IAA +GVD + +GP DL+A++G+L +  H  V++ ++
Sbjct:   11 KAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAEQAVASTRYPPEGIRG-VSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKTIQ 200
[Close]
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: GARL_ECO57 (5-keto-4-deoxy-D-glucarate aldolase OS=Escherichia coli O157:H7 GN=garL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.004e-27
Identity = 63/191 (32.98%), Postives = 112/191 (58.64%), Query Frame = 3 
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMR 830
            K  L + +   G +    +P   E+ GLAG+D++V+D EH P  IS  +  L AL  + +  ++R+P + P   K+ LD+G    + P +++ E A++AV+  R+PP G+RG      RA+ +G    Y +   + + I+ Q+ES++GV   + IAA +GVD + +GP DL+A++G+L +  H  V++ ++
Sbjct:   11 KAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAEQAVASTRYPPEGIRG-VSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQ 200
[Close]
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: GARL_ECO55 (5-keto-4-deoxy-D-glucarate aldolase OS=Escherichia coli (strain 55989 / EAEC) GN=garL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.004e-27
Identity = 63/191 (32.98%), Postives = 112/191 (58.64%), Query Frame = 3 
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMR 830
            K  L + +   G +    +P   E+ GLAG+D++V+D EH P  IS  +  L AL  + +  ++R+P + P   K+ LD+G    + P +++ E A++AV+  R+PP G+RG      RA+ +G    Y +   + + I+ Q+ES++GV   + IAA +GVD + +GP DL+A++G+L +  H  V++ ++
Sbjct:   11 KAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAEQAVASTRYPPEGIRG-VSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQ 200
[Close]
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: GARL_ECO45 (5-keto-4-deoxy-D-glucarate aldolase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=garL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.004e-27
Identity = 63/191 (32.98%), Postives = 112/191 (58.64%), Query Frame = 3 
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMR 830
            K  L + +   G +    +P   E+ GLAG+D++V+D EH P  IS  +  L AL  + +  ++R+P + P   K+ LD+G    + P +++ E A++AV+  R+PP G+RG      RA+ +G    Y +   + + I+ Q+ES++GV   + IAA +GVD + +GP DL+A++G+L +  H  V++ ++
Sbjct:   11 KAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAEQAVASTRYPPEGIRG-VSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQ 200
[Close]
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: GARL_ECO27 (5-keto-4-deoxy-D-glucarate aldolase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=garL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.004e-27
Identity = 63/191 (32.98%), Postives = 112/191 (58.64%), Query Frame = 3 
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMR 830
            K  L + +   G +    +P   E+ GLAG+D++V+D EH P  IS  +  L AL  + +  ++R+P + P   K+ LD+G    + P +++ E A++AV+  R+PP G+RG      RA+ +G    Y +   + + I+ Q+ES++GV   + IAA +GVD + +GP DL+A++G+L +  H  V++ ++
Sbjct:   11 KAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAEQAVASTRYPPEGIRG-VSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQ 200
[Close]
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: GARL_ECO24 (5-keto-4-deoxy-D-glucarate aldolase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=garL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.004e-27
Identity = 63/191 (32.98%), Postives = 112/191 (58.64%), Query Frame = 3 
Query:  258 KYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMR 830
            K  L + +   G +    +P   E+ GLAG+D++V+D EH P  IS  +  L AL  + +  ++R+P + P   K+ LD+G    + P +++ E A++AV+  R+PP G+RG      RA+ +G    Y +   + + I+ Q+ES++GV   + IAA +GVD + +GP DL+A++G+L +  H  V++ ++
Sbjct:   11 KAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAEQAVASTRYPPEGIRG-VSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQ 200
[Close]
BLAST of CX070272 vs. ExPASy Swiss-Prot
Match: HPCH_SHIFL (4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Shigella flexneri GN=hpcH PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.692e-27
Identity = 65/195 (33.33%), Postives = 108/195 (55.38%), Query Frame = 3 
Query:  252 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVA 836
            S K  L++     GL+L   S   AE+    G+D++++D EH P  +   L  L A+A   +  ++R   + P   K+ LD+G Q ++ PM+ + + A++AV   R+PP+G+RG    + RAS +     YL    +++ ++ Q+E+ E +K    I  V+GVD V +GP DLSA MGY  +P H +V+  +  A
Sbjct:    4 SFKAALKAGRPQIGLWLGLSSSYSAELLAGPGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEARKAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQA 198
The following BLAST results are available for this feature:
BLAST of CX070272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
GARL_ECOK13.004e-2732.985-keto-4-deoxy-D-glucarate aldolase OS=Escherichia... [more]
GARL_ECO8A3.004e-2732.985-keto-4-deoxy-D-glucarate aldolase OS=Escherichia... [more]
GARL_ECO7I3.004e-2732.985-keto-4-deoxy-D-glucarate aldolase OS=Escherichia... [more]
GARL_ECO5E3.004e-2732.985-keto-4-deoxy-D-glucarate aldolase OS=Escherichia... [more]
GARL_ECO573.004e-2732.985-keto-4-deoxy-D-glucarate aldolase OS=Escherichia... [more]
GARL_ECO553.004e-2732.985-keto-4-deoxy-D-glucarate aldolase OS=Escherichia... [more]
GARL_ECO453.004e-2732.985-keto-4-deoxy-D-glucarate aldolase OS=Escherichia... [more]
GARL_ECO273.004e-2732.985-keto-4-deoxy-D-glucarate aldolase OS=Escherichia... [more]
GARL_ECO243.004e-2732.985-keto-4-deoxy-D-glucarate aldolase OS=Escherichia... [more]
HPCH_SHIFL6.692e-2733.334-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Shi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15G10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15G10-N19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070272 ID=CX070272; Name=CX070272; organism=Citrus sinensis; type=EST; length=845bp
CTGAAACTGAGACAATTACAAAAGCAACCATGACCACGCTCACTTGCTCG
GGCTCCGGCACTGCCGCCACTGTCGCCAAGCTTGCACAAAATAAAATCAG
TTCATTTCCAAAAGCACCCTTGTTCACCCTCAACGGCAACAAATCGAAAA
TCGTTTTCCCAAAACTGAAATTGACCCCCTCAGTCTCACGCTCACCCTCG
GATCTGTCGCCAGGCGATCCCCTTTCCCCATCTCCATCACCCTCGCCCGA
ATCACTCAAGTATCGCCTCCAAAGCAACGAAACCCTGTACGGACTCTTCC
TCCTCTCTTTCTCCCCAACTCTTGCCGAAATTTCGGGCCTGGCCGGTTAC
GATTTCGTCGTCGTAGACATGGAGCACGGCCCTGGCGGCATTTCCGATGC
TCTCGCTTGCCTTCACGCTCTTGCCGCCACGGGGACGCCGGCCATTCTGC
GGCTCCCTGAAAGTTGCCCAACTTGGGCTAAAAAGGCCCTCGATCTGGGC
CCACAAGGGGTCATGTTCCCTATGATTGACTCCCCAGAAGCCGCCAAGGA
AGCGGTGTCGTATTGCCGGTTCCCGCCTTCTGGAGTGCGGGGATCCGCTC
ACACGGTGGTGAGAGCGTCCGGTTACGGGATTGATGAGGGATACTTGAGT
AATTACGAGGAGGAGTTGTTGATTATGTGCCAGGTGGAGAGCGAGGAAGG
CGTCAAGCGAGCCGAAGACATCGCGGCGGTTGATGGGGTTGACTGCGTGC
AAATGGGACCGTTGGATTTGAGTGCGAGTATGGGGTACTTGTGGGACCCA
GGGCACAGGAAGGTGAGGGAGATGATGAGGGTGGCGGAGAAAGGG
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