CX070216

Overview
NameCX070216
Unique NameCX070216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCMM (Riboflavin biosynthesis protein ribBA OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ribBA PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.114e-72
Identity = 136/223 (60.99%), Postives = 167/223 (74.89%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH
Sbjct:  181 LRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYTSIYEDVEHVALVRGEIAGPNSDGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGVVLYMRGHEGRGIGLLHKLQAYQLQDAGDDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDRMGH 403          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCA1 (Riboflavin biosynthesis protein ribBA OS=Mycobacterium avium (strain 104) GN=ribBA PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.114e-72
Identity = 135/223 (60.54%), Postives = 167/223 (74.89%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            LR FA   +L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LG P D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR KMGH
Sbjct:  181 LRVFADEHDLAMITIADLIEWRRKHEKHIERIAEARIPTRHGEFRAIGYTSIYEEVEHVALVRGEIAGPNSDGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKMGH 403          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCVP (Riboflavin biosynthesis protein ribBA OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=ribBA PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.761e-72
Identity = 139/229 (60.70%), Postives = 170/229 (74.24%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH-IYGLE 673
            LR FA   +L +ISIADLI +RRK +K + R + ARIPT  G F A  Y SI + +EH+A+VKG+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YG GAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH + GLE
Sbjct:  181 LRIFADEHDLALISIADLIEWRRKHEKHIARVAEARIPTRHGEFRAVGYTSIYEDVEHVALVKGEISGPHSDGHDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGDDTVDANLKLGLPADARDYGTGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDRMGHDLVGLE 409          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCTU (Riboflavin biosynthesis protein ribBA OS=Mycobacterium tuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.761e-72
Identity = 135/223 (60.54%), Postives = 167/223 (74.89%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR K+GH
Sbjct:  181 LRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYTSIYEDVEHVALVRGEIAGPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCTA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ribBA PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.761e-72
Identity = 135/223 (60.54%), Postives = 167/223 (74.89%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR K+GH
Sbjct:  181 LRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYTSIYEDVEHVALVRGEIAGPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCBT (Riboflavin biosynthesis protein ribBA OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ribBA PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.761e-72
Identity = 135/223 (60.54%), Postives = 167/223 (74.89%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR K+GH
Sbjct:  181 LRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYTSIYEDVEHVALVRGEIAGPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCBP (Riboflavin biosynthesis protein ribBA OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ribBA PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.761e-72
Identity = 135/223 (60.54%), Postives = 167/223 (74.89%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR K+GH
Sbjct:  181 LRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYTSIYEDVEHVALVRGEIAGPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCBO (Riboflavin biosynthesis protein ribBA OS=Mycobacterium bovis GN=ribBA PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.761e-72
Identity = 135/223 (60.54%), Postives = 167/223 (74.89%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR K+GH
Sbjct:  181 LRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYTSIYEDVEHVALVRGEIAGPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCUA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium ulcerans (strain Agy99) GN=ribBA PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.710e-72
Identity = 135/223 (60.54%), Postives = 166/223 (74.44%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRGV++Y+RGHEGRGIGL HKL+ Y LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH
Sbjct:  181 LRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRRGEFRAIGYTSIYENVEHVALVRGEIAGPNSDGDDVLVRVHSECLTGDVFGSRRCDCGSQLDAAMAMVAREGRGVVLYMRGHEGRGIGLLHKLQTYQLQDAGDDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDRMGH 403          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACSK (Riboflavin biosynthesis protein ribBA OS=Bacillus clausii (strain KSM-K16) GN=ribBA PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.035e-72
Identity = 133/223 (59.64%), Postives = 167/223 (74.89%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 670
            LR  A + NL +++I DLI YRRK +K+V R  A  +PT +G F A  Y + +DG E +A+VKGD+G+G+ +LVRVHSECLTGD+FGS RCDCG QL  A++QIEA GRGVL+Y++  EGRGIGL +K RAY LQ++G DTVEANE LG P D REYGIGAQ+LRDLG+R M+L+TNNP K  GL+GY L +  RVPL      EN+RYL TKR K+GH+  L
Sbjct:  176 LRIIADQHNLPLVTIKDLIAYRRKTEKVVTREVAISLPTEYGDFKAVGYTNTIDGKESVALVKGDVGNGEPVLVRVHSECLTGDVFGSKRCDCGPQLHAALKQIEAEGRGVLLYMK-QEGRGIGLINKFRAYKLQEEGYDTVEANERLGFPADLREYGIGAQILRDLGIRDMRLLTNNPRKIAGLEGYDLNIVERVPLQMEAVAENERYLHTKREKLGHMLNL 397          
The following BLAST results are available for this feature:
BLAST of CX070216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
RIBBA_MYCMM2.114e-7260.99Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCA12.114e-7260.54Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCVP2.761e-7260.70Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCTU2.761e-7260.54Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCTA2.761e-7260.54Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCBT2.761e-7260.54Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCBP2.761e-7260.54Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCBO2.761e-7260.54Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCUA4.710e-7260.54Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_BACSK8.035e-7259.64Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15E03-J5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070216 ID=CX070216; Name=CX070216; organism=Citrus sinensis; type=EST; length=790bp
GCTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTG
ATTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCT
GCTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAG
ATCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTG
GGGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGA
GATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGC
AATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTG
GTCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAAC
TTGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATT
GCCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATC
TTGGTGTTCGAACAATGAAGCTGATGACAAATAACCCTTCGAAGTATGTT
GGACTCAAGGGTTATGGTTTGGCAGTTGCAGGAAGGGTTCCCCTAATAAC
TCCCATTAAAAAGGAAAACAAGAGATATCTGGAGACTAAACGTGCTAAAA
TGGGTCACATTTATGGGTTAGAATCTAATGGCCGGTTAACAAATCTCATT
AACGTTAACGGTAAGCCGAGTATCAAATCTTCATCTGATACTGTATCTGA
CTCGTAAGCTGCACTAATTTACTTGGTTTGGACACGTGAT
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