CX070216

Overview
NameCX070216
Unique NameCX070216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_CHLPN (Riboflavin biosynthesis protein ribBA OS=Chlamydia pneumoniae GN=ribBA PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.790e-71
Identity = 124/217 (57.14%), Postives = 170/217 (78.34%), Query Frame = 2
Query:    8 EFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            EFA++ N+ +I +  +I +R   D+LV + S+AR+PT++G FT + Y S+L+G++H+A+VKG++    ++LVRVHSEC+TGDI GS RCDCG+QL+ AM  I   G GVLVYLRG EGRGIGLGHK+RAY LQD+G DTV+AN  +G PVDSREYGIGAQ+L DL + T+KL+T+NP KY GL+G+GL++  RVPL   I ++N++YL TK+ +MGH
Sbjct:  190 EFARKHNIAVIPVTSIIAHRMLSDRLVSKISSARLPTIYGDFTIHVYESLLEGMQHLALVKGNVAGKSNVLVRVHSECVTGDILGSKRCDCGEQLSSAMSYIAEKGTGVLVYLRGQEGRGIGLGHKVRAYALQDNGYDTVDANLAMGFPVDSREYGIGAQILVDLKLTTIKLITHNPQKYFGLQGFGLSITERVPLPVRISEDNEQYLRTKQERMGH 406          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BREBN (Riboflavin biosynthesis protein ribBA OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ribBA PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 8.883e-71
Identity = 134/223 (60.09%), Postives = 169/223 (75.78%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 670
            L E A+R +LK+I+IADLI YR + + +V +    ++PT +G F    Y + LDG EH+A++KG+IG  + ILVRVHSECLTGDIFGS RCDCG QL  A++QIEA GRG+L+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG   D R+YGIGAQ+LRDLGV+ M+L+TNNP K  GL GYGLAV  RVPL TP    NK+YL TK+ K+GH+  L
Sbjct:  176 LVEIARRFDLKLITIADLIAYRMRTESMVKKEIEVQLPTAYGDFRIAAYTNELDGKEHVALIKGEIGPDEPILVRVHSECLTGDIFGSYRCDCGPQLHAALEQIEANGRGILLYMR-QEGRGIGLINKLRAYKLQEEGLDTVEANEKLGFAADLRDYGIGAQILRDLGVQRMRLLTNNPRKIRGLTGYGLAVEERVPLQTPEHLHNKQYLSTKQEKLGHLLHL 397          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_GEOSW (Riboflavin biosynthesis protein ribBA OS=Geobacillus sp. (strain WCH70) GN=ribBA PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.979e-70
Identity = 133/220 (60.45%), Postives = 165/220 (75.00%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            LR+ A   +LK+I+I DLI YRR+++KLV R     +PT +G F A  Y +I+DG EH+A+VKG+I   +  LVRVHSECLTGD+FGS RCDCG QL  A++QIE  GRGVL+Y+R  EGRGIGL +KLRAY LQ+ G DTVEANE LG P D R+YGIGAQ+L+DLGV  M+L+TNNP K  GLKG+GL V  RVPL  P  KEN++YL TK  K+GH+
Sbjct:  176 LRKIADEFDLKMITIKDLIEYRRRKEKLVKREVEVMLPTEFGKFKAIGYTNIVDGKEHVALVKGEIIPDEPTLVRVHSECLTGDVFGSCRCDCGPQLHAALRQIEEEGRGVLLYMR-QEGRGIGLINKLRAYKLQEQGYDTVEANERLGFPADLRDYGIGAQILKDLGVTKMRLLTNNPRKITGLKGHGLEVVERVPLQMPANKENEKYLRTKYEKLGHM 394          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACWK (Riboflavin biosynthesis protein ribBA OS=Bacillus weihenstephanensis (strain KBAB4) GN=ribBA PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 9.822e-70
Identity = 132/223 (59.19%), Postives = 168/223 (75.34%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 670
            L E AK+ ++K+I+I DLI YRR  + LV R     +PT +G F A  Y + LD  EHIA+VKGDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG+++++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK +K+GH+  L
Sbjct:  176 LLECAKQFDIKMITIEDLIAYRRHHETLVTREVEITLPTDFGTFHAIGYSNSLDMKEHIALVKGDISTGEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGLDTVEANEKLGFPADLRDYGIGAQILKDLGLQSLRLLTNNPRKIAGLQGYDLEVTERVPLQMPTKEENKTYLQTKASKLGHLLNL 397          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACCR (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ribBA PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.732e-69
Identity = 132/223 (59.19%), Postives = 168/223 (75.34%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 670
            L E AK+ ++K+I+I DLI YRR  + LV R +   +PT +G F A  Y + LD  EHIA+VKGDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG+++++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  176 LIECAKQFDIKMITIEDLIAYRRHHETLVTREAEITLPTDFGTFHAIGYSNSLDTKEHIALVKGDISTGEPVLVRVHSECLTGDVFGSHRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQSLRLLTNNPRKIAGLQGYDLEVVERVPLQMPAKEENKSYLQTKVNKLGHLLNL 397          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_AQUAE (Riboflavin biosynthesis protein ribBA OS=Aquifex aeolicus GN=ribBA PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.366e-69
Identity = 126/221 (57.01%), Postives = 164/221 (74.21%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 664
            L EFAK+ NLKII+IADLI+YR +R+ LV++ ++A +PT WG F  + YR  L G E +A+  G+  + + +LVRVHSECLTGD+F S RCDC  QL  A++ I   G+GVLVY+ GHEGRGIG+ +K++AY LQ+ G DTVEANE+LG P D R+YGIGAQ+LRDLGVR MKLMTNNP K V L+G+GL V  RVP+       NK YL+ K+ K+GH++
Sbjct:  186 LMEFAKKHNLKIITIADLIKYRLRRETLVEKVASAHLPTPWGVFKIHAYRHKLTGEEQVALTMGEWKEDEPVLVRVHSECLTGDVFRSFRCDCRPQLEKALEMIAKEGKGVLVYILGHEGRGIGIANKIKAYELQEKGYDTVEANEKLGYPPDLRDYGIGAQILRDLGVRKMKLMTNNPRKIVALEGFGLEVVERVPIKIEPNPYNKIYLQVKKDKLGHMF 406          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACHK (Riboflavin biosynthesis protein ribBA OS=Bacillus thuringiensis subsp. konkukian GN=ribBA PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.086e-68
Identity = 131/223 (58.74%), Postives = 166/223 (74.44%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 670
            L + AK+ ++K+I+I DLI YRR  + LV R     +PT +G F A  Y + LD  EHIA+VKGDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  176 LLQCAKQFDIKMITIEDLIAYRRHHETLVTREVEITLPTDFGTFQAIGYSNSLDTKEHIALVKGDISTGEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQHLRLLTNNPRKIAGLQGYDLTVTERVPLQMPAKEENKTYLQTKVNKLGHLLNL 397          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACCZ (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain ZK / E33L) GN=ribBA PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.086e-68
Identity = 131/223 (58.74%), Postives = 166/223 (74.44%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 670
            L + AK+ ++K+I+I DLI YRR  + LV R     +PT +G F A  Y + LD  EHIA+VKGDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  176 LLQCAKQFDIKMITIEDLIAYRRHHETLVTREVEITLPTDFGTFQAIGYSNSLDTKEHIALVKGDISTGEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQHLRLLTNNPRKIAGLQGYDLTVTERVPLQMPAKEENKTYLQTKVNKLGHLLNL 397          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACC4 (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain B4264) GN=ribBA PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.086e-68
Identity = 132/223 (59.19%), Postives = 167/223 (74.89%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 670
            L E AK+ ++K+I+I DLI YRR  + LV R     +PT +G F A  Y + LD  EHIA+VKGDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG+++++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  176 LIECAKQFDIKMITIEDLIAYRRHHETLVTREVEITLPTDFGTFHAIGYSNSLDTKEHIALVKGDISTGEPVLVRVHSECLTGDVFGSHRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQSLRLLTNNPRKIAGLQGYDLEVIERVPLQMPAKEENKSYLQTKVNKLGHLLNL 397          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACC3 (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain 03BB102) GN=ribBA PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.086e-68
Identity = 131/223 (58.74%), Postives = 166/223 (74.44%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 670
            L + AK+ ++K+I+I DLI YRR  + LV R     +PT +G F A  Y + LD  EHIA+VKGDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  176 LLQCAKQFDIKMITIEDLIAYRRHHETLVTREVEITLPTDFGTFQAIGYSNSLDTKEHIALVKGDISTGEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQHLRLLTNNPRKIAGLQGYDLTVTERVPLQMPAKEENKTYLQTKVNKLGHLLNL 397          
The following BLAST results are available for this feature:
BLAST of CX070216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
RIBBA_CHLPN1.790e-7157.14Riboflavin biosynthesis protein ribBA OS=Chlamydia... [more]
RIBBA_BREBN8.883e-7160.09Riboflavin biosynthesis protein ribBA OS=Brevibaci... [more]
RIBBA_GEOSW1.979e-7060.45Riboflavin biosynthesis protein ribBA OS=Geobacill... [more]
RIBBA_BACWK9.822e-7059.19Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACCR3.732e-6959.19Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_AQUAE6.366e-6957.01Riboflavin biosynthesis protein ribBA OS=Aquifex a... [more]
RIBBA_BACHK1.086e-6858.74Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACCZ1.086e-6858.74Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACC41.086e-6859.19Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACC31.086e-6858.74Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15E03-J5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070216 ID=CX070216; Name=CX070216; organism=Citrus sinensis; type=EST; length=790bp
GCTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTG
ATTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCT
GCTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAG
ATCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTG
GGGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGA
GATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGC
AATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTG
GTCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAAC
TTGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATT
GCCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATC
TTGGTGTTCGAACAATGAAGCTGATGACAAATAACCCTTCGAAGTATGTT
GGACTCAAGGGTTATGGTTTGGCAGTTGCAGGAAGGGTTCCCCTAATAAC
TCCCATTAAAAAGGAAAACAAGAGATATCTGGAGACTAAACGTGCTAAAA
TGGGTCACATTTATGGGTTAGAATCTAATGGCCGGTTAACAAATCTCATT
AACGTTAACGGTAAGCCGAGTATCAAATCTTCATCTGATACTGTATCTGA
CTCGTAAGCTGCACTAATTTACTTGGTTTGGACACGTGAT
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