CX070216

Overview
NameCX070216
Unique NameCX070216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACC7 (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain AH187) GN=ribBA PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.419e-68
Identity = 131/223 (58.74%), Postives = 165/223 (73.99%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 670
            L + AK+ ++K+I+I DLI YRR  + LV R     +PT +G F A  Y + LD  EHIA+VKGDI  G  +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  176 LLQCAKQFDIKMITIEDLIAYRRHHETLVTREVEITLPTDFGTFHAIGYSNSLDSKEHIALVKGDISTGDPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQHLRLLTNNPRKIAGLQGYDLEVIERVPLQMPAKEENKTYLQTKVNKLGHLLNL 397          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACC1 (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus (strain ATCC 10987) GN=ribBA PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.419e-68
Identity = 131/223 (58.74%), Postives = 166/223 (74.44%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 670
            L + AK+ ++K+I+I DLI YRR  + LV R     +PT +G F A  Y + LD  EHIA+VKGDI  G+ +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  G+GVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L V  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  176 LLQCAKQFDIKMITIEDLIAYRRHHETLVTREVEITLPTDFGTFHAIGYSNSLDTKEHIALVKGDISTGEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALAQIEREGKGVLLYMR-QEGRGIGLLNKLRAYKLQEEGFDTVEANEKLGFPADLRDYGIGAQILKDLGLQHLRLLTNNPRKIAGLQGYDLEVIERVPLQMPAKEENKTYLQTKVNKLGHLLNL 397          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_PELLD (Riboflavin biosynthesis protein ribBA OS=Pelodictyon luteolum (strain DSM 273) GN=ribBA PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.389e-68
Identity = 126/220 (57.27%), Postives = 165/220 (75.00%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L +F ++  LK+I+I DL+ YR +R+KLV+R+  +++PT +G F    Y S +D   H+A VKGD+  G+ +LVRVHS+C TGD F S RCDCG+QLA A++ IE  GRGVLVYL   EGRGIGL +KL+AYNLQD+G DTVEANE+LG   D R+YGIGAQ+L+DLGVR M+L+TNNP K +GL+GYGL +  R+PL     + N+ YLETKR KMGH+
Sbjct:  182 LLKFKEKFGLKLITIKDLVAYRMQRNKLVERAVESKLPTAYGEFGLIAYESFIDHHNHMAFVKGDVSSGEPVLVRVHSQCATGDTFASLRCDCGNQLASALRMIEKEGRGVLVYLM-QEGRGIGLINKLKAYNLQDEGFDTVEANEQLGFKADLRDYGIGAQILQDLGVRKMRLLTNNPKKVIGLEGYGLEIVERLPLEIAPNEVNQFYLETKRDKMGHM 400          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACCN (Riboflavin biosynthesis protein ribBA OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=ribBA PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.675e-67
Identity = 126/223 (56.50%), Postives = 164/223 (73.54%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 670
            L + AK+ ++K+I+I DLI YRR  +  V +     +PT +G F A  Y + LD  EHIA++KGD+   + +LVRVHSECLTGD+FGS RCDCG QL  A+ QIE  GRGVL+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG P D R+YGIGAQ+L+DLG++ ++L+TNNP K  GL+GY L +  RVPL  P K+ENK YL+TK  K+GH+  L
Sbjct:  176 LIQVAKQFDIKMITIEDLIAYRRHHETFVTKEVEITLPTEFGTFHAIGYTNSLDQKEHIALIKGDVSTDEPVLVRVHSECLTGDVFGSCRCDCGPQLHAALTQIEREGRGVLLYMR-QEGRGIGLLNKLRAYKLQEEGLDTVEANEKLGFPADLRDYGIGAQILKDLGLQKLRLLTNNPRKIAGLQGYELEIVERVPLQMPTKQENKTYLQTKVTKLGHLLNL 397          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_PROVI (Riboflavin biosynthesis protein ribBA OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=ribBA PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.959e-67
Identity = 129/220 (58.64%), Postives = 157/220 (71.36%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L    ++  LK+I+I DL+ ++ +R KLV R+  + IPT +G F    Y S  D   H+A VKGD+   + +LVRVHS+C TGD F S RCDCG+QLA A++ IE  GRGVLVYL   EGRGIGL +KL+AYNLQDDG DTVEANEELG   D R+YGIGAQ+L+DLGVR M+LMTNNP K VGL+GYGL +  RVPL       NK YLETKR KMGH+
Sbjct:  182 LMTIKEKFGLKLITIKDLVAFQMRRSKLVQRAVESNIPTAYGEFRLMAYESFTDQQNHMAFVKGDVSTDEPVLVRVHSQCATGDTFASLRCDCGNQLASALRMIEKEGRGVLVYLM-QEGRGIGLINKLKAYNLQDDGFDTVEANEELGFKADLRDYGIGAQILQDLGVRKMRLMTNNPKKVVGLEGYGLEIVERVPLEIEPNAVNKTYLETKRDKMGHM 400          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACSU (Riboflavin biosynthesis protein ribBA OS=Bacillus subtilis GN=ribBA PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.959e-67
Identity = 131/221 (59.28%), Postives = 162/221 (73.30%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQD-ILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L E AK+  LK+I+I DLI+YR     LV+R     +PT +G F  Y Y + +DG EH+A V GD+  G++ +LVRVHSECLTGD+FGS RCDCG QL  A+ QI A GRGVL+YLR  EGRGIGL +KL+AY LQ+ G DTVEANE LG   D R YGIGAQ+LRDLGVR MKL+TNNP K  GL+GYGL+++ RVPL    K+ NK+YL+TK  K+GH+
Sbjct:  176 LIEIAKKHQLKMITIKDLIQYRYNLTTLVEREVDITLPTDFGTFKVYGYTNEVDGKEHVAFVMGDVPFGEEPVLVRVHSECLTGDVFGSHRCDCGPQLHAALNQIAAEGRGVLLYLR-QEGRGIGLINKLKAYKLQEQGYDTVEANEALGFLPDLRNYGIGAQILRDLGVRNMKLLTNNPRKIAGLEGYGLSISERVPLQMEAKEHNKKYLQTKMNKLGHL 395          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_PELPB (Riboflavin biosynthesis protein ribBA OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=ribBA PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.468e-65
Identity = 124/213 (58.22%), Postives = 156/213 (73.24%), Query Frame = 2
Query:   29 LKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYG 667
            LK+I+I +L+ Y+ +R+KLV R+  +R+PT++G F    Y S  D   H+A VKGD+   + +LVRVHS+C TGD F S RCDCG+QLA A+  IE  GRGVL+YL   EGRGIGL +KL+AYNLQD G DTVEANE+LG   D R+YGIGAQ+L+DLGVR MKLMTNNP K VGL+GYGL +  RVPL       N+ YL+TKR K+GH+ G
Sbjct:  191 LKLITIKELVAYQMQRNKLVQRAVESRLPTIYGEFRLIAYESFTDQHNHMAFVKGDVTTDEPVLVRVHSQCATGDTFASLRCDCGNQLASALTMIEKEGRGVLIYLM-QEGRGIGLINKLKAYNLQDQGYDTVEANEKLGFKADLRDYGIGAQILKDLGVRKMKLMTNNPKKVVGLEGYGLEIVERVPLEMASNPMNQFYLDTKRDKLGHMIG 402          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_PROA2 (Riboflavin biosynthesis protein ribBA OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=ribBA PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.513e-65
Identity = 127/228 (55.70%), Postives = 159/228 (69.74%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIE--HIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESN 679
            L +  ++ +LK+I+I DL+ Y+ KR KLV R+    +PT  G F    Y +  D  +  H+A VKGD    + +LVRVHS+C TGDIF S RCDCG+QLA AMQQIE AG+GVL+YL   EGRGIGL +KL+AYNLQD G DTVEANE+LG   D R+YGIGAQ+L+DLGV+ M+L+TNNP K VGL+GYGL +  RVP+       N  YLETKR KMGH+     N
Sbjct:  182 LLKIKEKFDLKLITIKDLVAYQMKRKKLVARAVETSLPTRHGDFRLIAYEACCDSQQQNHLAFVKGDFSTDEPVLVRVHSQCATGDIFASLRCDCGNQLASAMQQIEKAGKGVLIYLM-QEGRGIGLINKLKAYNLQDQGFDTVEANEQLGFKADLRDYGIGAQILQDLGVKKMRLLTNNPKKIVGLEGYGLEIVERVPIEIAPNSVNLSYLETKRDKMGHMINCSCN 408          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_SYNY3 (Riboflavin biosynthesis protein ribBA OS=Synechocystis sp. (strain PCC 6803) GN=ribBA PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.615e-64
Identity = 124/221 (56.11%), Postives = 157/221 (71.04%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGD--GQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            L E+A++ +LK+ISIADLI YR + D+ V R +    P+ +G F  Y YR++LD  EHIA+VKGD  +   Q ++VR+HSECLTGD  GS RCDC  QL  A++ +E  G GV+VYLR  EGRGIGL +KL+AY+LQD G DTVEANE LG P D R+YG+GAQML DLGV+ ++L+TNNP K  GLKGYGL +  RVPL+      N  YL TK  K+GH
Sbjct:  179 LVEYARKYDLKLISIADLISYRLQHDRFVQRETICEFPSQFGEFKLYAYRNLLDQTEHIAIVKGDPSEFGQQPVMVRMHSECLTGDALGSLRCDCRMQLQAALKMLENHGLGVVVYLR-QEGRGIGLVNKLKAYSLQDLGYDTVEANERLGFPADLRDYGMGAQMLNDLGVKQIRLITNNPRKIAGLKGYGLEIVERVPLLIEANDYNSHYLTTKAEKLGH 398          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_CHLMU (Riboflavin biosynthesis protein ribBA OS=Chlamydia muridarum GN=ribBA PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.053e-64
Identity = 115/217 (53.00%), Postives = 158/217 (72.81%), Query Frame = 2
Query:    8 EFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            +FA++    +I++ DLI YR   D LV+  S+ARIPT +G F  + Y+SI+DG EH A+VKGDI + + + VRVHSECLTGD+ GS RCDCG QL +AM+ I   G GV+VYLRG EGRGIG GHK++AY LQD G DTVEAN +L  P+D+REYG+ AQ+L+DL + +++L+T+NP K+  L+  G+ +  R+ L   +  EN+RYL TK+ +MGH
Sbjct:  185 DFAEQHGFTVITVDDLITYRWTFDSLVEHVSSARIPTKYGEFFIHVYKSIIDGTEHFALVKGDIREQESVPVRVHSECLTGDVLGSCRCDCGAQLDMAMRYIAEQGLGVIVYLRGQEGRGIGFGHKIQAYALQDLGYDTVEANLQLSFPIDAREYGVAAQILKDLRLTSVRLITHNPKKFFELQRLGIHILDRIVLPVIVSSENERYLRTKKDRMGH 401          
The following BLAST results are available for this feature:
BLAST of CX070216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
RIBBA_BACC72.419e-6858.74Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACC12.419e-6858.74Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_PELLD5.389e-6857.27Riboflavin biosynthesis protein ribBA OS=Pelodicty... [more]
RIBBA_BACCN2.675e-6756.50Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_PROVI5.959e-6758.64Riboflavin biosynthesis protein ribBA OS=Prostheco... [more]
RIBBA_BACSU5.959e-6759.28Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_PELPB1.468e-6558.22Riboflavin biosynthesis protein ribBA OS=Pelodicty... [more]
RIBBA_PROA29.513e-6555.70Riboflavin biosynthesis protein ribBA OS=Prostheco... [more]
RIBBA_SYNY33.615e-6456.11Riboflavin biosynthesis protein ribBA OS=Synechocy... [more]
RIBBA_CHLMU8.053e-6453.00Riboflavin biosynthesis protein ribBA OS=Chlamydia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15E03-J5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070216 ID=CX070216; Name=CX070216; organism=Citrus sinensis; type=EST; length=790bp
GCTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTG
ATTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCT
GCTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAG
ATCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTG
GGGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGA
GATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGC
AATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTG
GTCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAAC
TTGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATT
GCCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATC
TTGGTGTTCGAACAATGAAGCTGATGACAAATAACCCTTCGAAGTATGTT
GGACTCAAGGGTTATGGTTTGGCAGTTGCAGGAAGGGTTCCCCTAATAAC
TCCCATTAAAAAGGAAAACAAGAGATATCTGGAGACTAAACGTGCTAAAA
TGGGTCACATTTATGGGTTAGAATCTAATGGCCGGTTAACAAATCTCATT
AACGTTAACGGTAAGCCGAGTATCAAATCTTCATCTGATACTGTATCTGA
CTCGTAAGCTGCACTAATTTACTTGGTTTGGACACGTGAT
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