CX070216

Overview
NameCX070216
Unique NameCX070216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_ACTPL (Riboflavin biosynthesis protein ribBA OS=Actinobacillus pleuropneumoniae GN=ribBA PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.053e-64
Identity = 120/221 (54.30%), Postives = 155/221 (70.14%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 664
            L++FA   N+  I+I  L  YRRK D LV + S  ++PT +G F A+ +  ++ G EH+A+VKGD+ DG+ +L R+HSECLTGD FGS RCDCG Q A AM QIE  GRGV++YLR  EGRGIGL +KLRAY LQD G DTVEAN  LG   D REY IGAQM + LGV++++L+TNNP+K  GLK  GL +  R P+I    K +  YL+ K+ KMGH++
Sbjct:  180 LQKFAVEHNMPFITIQQLQEYRRKHDSLVKQISVVKMPTKYGEFMAHSFVEVISGKEHVALVKGDLTDGEQVLARIHSECLTGDAFGSQRCDCGQQFAAAMTQIEQEGRGVILYLR-QEGRGIGLINKLRAYELQDKGMDTVEANVALGFKEDEREYYIGAQMFQQLGVKSIRLLTNNPAKIEGLKEQGLNIVAREPIIVEPNKNDIDYLKVKQIKMGHMF 399          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_ACTPJ (Riboflavin biosynthesis protein ribBA OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=ribBA PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.053e-64
Identity = 120/221 (54.30%), Postives = 155/221 (70.14%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 664
            L++FA   N+  I+I  L  YRRK D LV + S  ++PT +G F A+ +  ++ G EH+A+VKGD+ DG+ +L R+HSECLTGD FGS RCDCG Q A AM QIE  GRGV++YLR  EGRGIGL +KLRAY LQD G DTVEAN  LG   D REY IGAQM + LGV++++L+TNNP+K  GLK  GL +  R P+I    K +  YL+ K+ KMGH++
Sbjct:  180 LQKFAVEHNMPFITIQQLQEYRRKHDSLVKQISVVKMPTKYGEFMAHSFVEVISGKEHVALVKGDLTDGEQVLARIHSECLTGDAFGSQRCDCGQQFAAAMTQIEQEGRGVILYLR-QEGRGIGLINKLRAYELQDKGMDTVEANVALGFKEDEREYYIGAQMFQQLGVKSIRLLTNNPAKIEGLKEQGLNIVAREPIIVEPNKNDIDYLKVKQIKMGHMF 399          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_ACTP7 (Riboflavin biosynthesis protein ribBA OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=ribBA PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.053e-64
Identity = 120/221 (54.30%), Postives = 155/221 (70.14%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 664
            L++FA   N+  I+I  L  YRRK D LV + S  ++PT +G F A+ +  ++ G EH+A+VKGD+ DG+ +L R+HSECLTGD FGS RCDCG Q A AM QIE  GRGV++YLR  EGRGIGL +KLRAY LQD G DTVEAN  LG   D REY IGAQM + LGV++++L+TNNP+K  GLK  GL +  R P+I    K +  YL+ K+ KMGH++
Sbjct:  180 LQKFAVEHNMPFITIQQLQEYRRKHDSLVKQISVVKMPTKYGEFMAHSFVEVISGKEHVALVKGDLTDGEQVLARIHSECLTGDAFGSQRCDCGQQFAAAMTQIEQEGRGVILYLR-QEGRGIGLINKLRAYELQDKGMDTVEANVALGFKEDEREYYIGAQMFQQLGVKSIRLLTNNPAKIEGLKEQGLNIVAREPIIVEPNKNDIDYLKVKQIKMGHMF 399          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_ACTP2 (Riboflavin biosynthesis protein ribBA OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=ribBA PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.053e-64
Identity = 120/221 (54.30%), Postives = 155/221 (70.14%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 664
            L++FA   N+  I+I  L  YRRK D LV + S  ++PT +G F A+ +  ++ G EH+A+VKGD+ DG+ +L R+HSECLTGD FGS RCDCG Q A AM QIE  GRGV++YLR  EGRGIGL +KLRAY LQD G DTVEAN  LG   D REY IGAQM + LGV++++L+TNNP+K  GLK  GL +  R P+I    K +  YL+ K+ KMGH++
Sbjct:  180 LQKFAVEHNMPFITIQQLQEYRRKHDSLVKQISVVKMPTKYGEFMAHSFVEVISGKEHVALVKGDLTDGEQVLARIHSECLTGDAFGSQRCDCGQQFAAAMTQIEQEGRGVILYLR-QEGRGIGLINKLRAYELQDKGMDTVEANVALGFKEDEREYYIGAQMFQQLGVKSIRLLTNNPAKIEGLKEQGLNIVAREPIIVEPNKNDIDYLKVKQIKMGHMF 399          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_CHLTR (Riboflavin biosynthesis protein ribBA OS=Chlamydia trachomatis GN=ribBA PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.052e-63
Identity = 117/216 (54.17%), Postives = 159/216 (73.61%), Query Frame = 2
Query:   11 FAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            FA++ +L +I++ DLI YR   D LV + S+AR+PT +G F+ + Y SI+DG +H A+VKGDI + + + VRVHSECLTGDI GS RCDCG QL +AM+ I   G GV+VYLRG EGRGIG GHK+RAY LQD G DTV+AN +LG P+D+REYG+ AQ+L+DL + +++L+T+NP K+  L+  G+ V  R+ L   I  EN+ YL TK+ +MGH
Sbjct:  186 FAEQHDLTVITVDDLITYRYTYDSLVTKISSARLPTKYGDFSIHVYESIIDGTQHFALVKGDIHEQEAVPVRVHSECLTGDILGSCRCDCGAQLDMAMRYIAEEGLGVIVYLRGQEGRGIGFGHKIRAYALQDLGYDTVDANLQLGFPIDAREYGMAAQVLKDLQLTSVRLITHNPRKFFELQRLGIHVLDRIILPVSISTENEGYLRTKKERMGH 401          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACA2 (Riboflavin biosynthesis protein ribBA OS=Bacillus amyloliquefaciens (strain FZB42) GN=ribBA PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.343e-63
Identity = 126/221 (57.01%), Postives = 157/221 (71.04%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG-DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L E A+R  LK+I+I DLI YR     LV+R     +PT +G F  Y Y + +DG EH+A V GD+  + + +LVRVHSECLTGD+F S RCDCG QL  A+ QI   GRGVL+YLR  EGRGIGL +KL+AY LQ+ G DTVEANE LG   D R YGIGAQ+LRDLGV+ MKL+TNNP K  GL+GYGL+++ RVPL     + NK+YL+TK  K+GH+
Sbjct:  176 LAEIAERHQLKMITIKDLIEYRYNITTLVNREVDITLPTDFGTFRVYGYTNEVDGKEHLAFVMGDVPFNSEPVLVRVHSECLTGDVFASHRCDCGPQLHAALAQIAEEGRGVLLYLR-QEGRGIGLINKLKAYRLQEQGYDTVEANEALGFLPDLRNYGIGAQILRDLGVQHMKLLTNNPRKIAGLEGYGLSISERVPLQMEASEHNKQYLQTKMKKLGHL 395          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACAM (Riboflavin biosynthesis protein ribBA OS=Bacillus amyloliquefaciens GN=ribBA PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.904e-63
Identity = 125/221 (56.56%), Postives = 156/221 (70.59%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG-DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            + E AK   LK+I+I DLI YR     LV+R     +PT +G F  Y Y + +DG EH+A V GD+  +   +LVRVHSECLTGD+F S RCDCG QL  A++QI   GRGVL+YLR  EGRGIGL +KL+AY LQ+ G DTVEANE LG   D R YGIGAQ+LRDLGV+ MKL+TNNP K  GL+GYGL+++ RVPL     + NK+YL+TK  K+GH+
Sbjct:  176 ISEIAKSHQLKMITIKDLIEYRYNITTLVNREVDITLPTDFGTFRVYGYTNEVDGKEHLAFVMGDVPFNSGPVLVRVHSECLTGDVFASHRCDCGPQLHAALRQIAEEGRGVLLYLR-QEGRGIGLINKLKAYRLQEQGYDTVEANEALGFLPDLRNYGIGAQILRDLGVQHMKLLTNNPRKIAGLEGYGLSISDRVPLQMEASEHNKQYLQTKMKKLGHL 395          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACV8 (Riboflavin biosynthesis protein ribBA OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ribBA PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.844e-62
Identity = 118/219 (53.88%), Postives = 156/219 (71.23%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            LR+ A    LK+ISI DLI YR K++ LV++     +PT +G F    +R   +G+EHIA++KGDI +G+ +LVRVHS C TGDIFGS RCDCG+QL  A+Q IE  G+G +VYL   EGRGIGL  K++AY LQ++G DTVEAN  LG   D R+YG+GAQ+LR +GV  M+L+TNNP K VGL+ YGL++   VP+     K N+RYL+TK+ +MGH
Sbjct:  181 LRKMADEWGLKLISIRDLIAYRLKQESLVEKGVEVDMPTEYGHFRLIPFRQKSNGLEHIAIIKGDIKEGEPVLVRVHSSCATGDIFGSMRCDCGEQLHKALQMIEKEGKGAVVYL-NQEGRGIGLMEKMKAYKLQENGVDTVEANILLGHQADERDYGVGAQILRSIGVTQMRLLTNNPVKRVGLESYGLSIVENVPIEITPNKYNERYLKTKKDRMGH 398          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACFR (Riboflavin biosynthesis protein ribBA OS=Bacteroides fragilis GN=ribBA PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.334e-61
Identity = 117/219 (53.42%), Postives = 155/219 (70.78%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            L E A+R  LKIISI DLI YR + + +VDR     +PT +G F    +R   +G+EHIA++KG     + ILVRVHS C+TGDIFGS RC+CG+QL  AM+ IEAAG+GV+VY+   EGRGIGL +K+ AY LQ++G DTV+AN  LG   D R+YG+GAQ+LR++GV+ MKLMTNNP K +GL+ YGL +   V +       N+RYL+TK+ +MGH
Sbjct:  181 LVEVARRFGLKIISIKDLIAYRLQMESIVDRGVEVDMPTQFGHFRLIPFRQKSNGMEHIALIKGTWDTDEPILVRVHSSCMTGDIFGSCRCECGEQLHKAMEMIEAAGKGVIVYM-NQEGRGIGLMNKIAAYKLQEEGYDTVDANLHLGFDADERDYGVGAQILREIGVKKMKLMTNNPVKRIGLEAYGLEITENVGIEIKPNPYNERYLKTKKDRMGH 398          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACFN (Riboflavin biosynthesis protein ribBA OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ribBA PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.334e-61
Identity = 117/219 (53.42%), Postives = 155/219 (70.78%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            L E A+R  LKIISI DLI YR + + +VDR     +PT +G F    +R   +G+EHIA++KG     + ILVRVHS C+TGDIFGS RC+CG+QL  AM+ IEAAG+GV+VY+   EGRGIGL +K+ AY LQ++G DTV+AN  LG   D R+YG+GAQ+LR++GV+ MKLMTNNP K +GL+ YGL +   V +       N+RYL+TK+ +MGH
Sbjct:  181 LVEVARRFGLKIISIKDLIAYRLQMESIVDRGVEVDMPTQFGHFRLIPFRQKSNGMEHIALIKGTWDTDEPILVRVHSSCMTGDIFGSCRCECGEQLHKAMEMIEAAGKGVIVYM-NQEGRGIGLMNKIAAYKLQEEGYDTVDANLHLGFDADERDYGVGAQILREIGVKKMKLMTNNPVKRIGLEAYGLEITENVGIEIKPNPYNERYLKTKKDRMGH 398          
The following BLAST results are available for this feature:
BLAST of CX070216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
RIBBA_ACTPL8.053e-6454.30Riboflavin biosynthesis protein ribBA OS=Actinobac... [more]
RIBBA_ACTPJ8.053e-6454.30Riboflavin biosynthesis protein ribBA OS=Actinobac... [more]
RIBBA_ACTP78.053e-6454.30Riboflavin biosynthesis protein ribBA OS=Actinobac... [more]
RIBBA_ACTP28.053e-6454.30Riboflavin biosynthesis protein ribBA OS=Actinobac... [more]
RIBBA_CHLTR1.052e-6354.17Riboflavin biosynthesis protein ribBA OS=Chlamydia... [more]
RIBBA_BACA22.343e-6357.01Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACAM8.904e-6356.56Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_BACV89.844e-6253.88Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]
RIBBA_BACFR8.334e-6153.42Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]
RIBBA_BACFN8.334e-6153.42Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15E03-J5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070216 ID=CX070216; Name=CX070216; organism=Citrus sinensis; type=EST; length=790bp
GCTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTG
ATTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCT
GCTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAG
ATCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTG
GGGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGA
GATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGC
AATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTG
GTCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAAC
TTGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATT
GCCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATC
TTGGTGTTCGAACAATGAAGCTGATGACAAATAACCCTTCGAAGTATGTT
GGACTCAAGGGTTATGGTTTGGCAGTTGCAGGAAGGGTTCCCCTAATAAC
TCCCATTAAAAAGGAAAACAAGAGATATCTGGAGACTAAACGTGCTAAAA
TGGGTCACATTTATGGGTTAGAATCTAATGGCCGGTTAACAAATCTCATT
AACGTTAACGGTAAGCCGAGTATCAAATCTTCATCTGATACTGTATCTGA
CTCGTAAGCTGCACTAATTTACTTGGTTTGGACACGTGAT
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