CX070216

Overview
NameCX070216
Unique NameCX070216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_THEPX (Riboflavin biosynthesis protein ribBA OS=Thermoanaerobacter sp. (strain X514) GN=ribBA PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.088e-60
Identity = 121/220 (55.00%), Postives = 158/220 (71.82%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L EFAK+  L+IISI DLI+YR K + LV R + A++PT +G F    Y  IL G +H+A++KGD+   + +LVR+HSECLTGDI GS RCDCGDQL  AM++I   G G+LVYLR  EGRGIGL +K++AY+LQD G DTVEAN +LG P D REY I AQ+L+D+GV+ +++MTNNP K   L  YGL V  RV +       N++YL+TK+ KMGH+
Sbjct:  176 LLEFAKKFGLRIISIEDLIKYRMKNEILVRRVAQAKLPTKYGNFEIVGYEEILTGKQHVALIKGDVNK-EPVLVRIHSECLTGDILGSLRCDCGDQLHAAMERIGQEG-GILVYLR-QEGRGIGLLNKIKAYHLQDQGLDTVEANIKLGFPPDLREYNIAAQILKDIGVKKIRIMTNNPQKITELSDYGLDVVERVSIEICPNHYNEKYLKTKKEKMGHL 392          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_THEP3 (Riboflavin biosynthesis protein ribBA OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ribBA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.214e-60
Identity = 121/220 (55.00%), Postives = 158/220 (71.82%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L EFAK+  L+IISI DLI+YR K + LV R + A++PT +G F    Y  IL   +H+A++KGDI   + +LVR+HSECLTGDI GS RCDCGDQL  AM++I   G GVLVYLR  EGRGIGL +K++AY+LQD G DTVEAN +LG P D REY I AQ+L+D+GV+ +++MTNNP K + L  YGL V  RV +       N++YL+TK+ +MGH+
Sbjct:  176 LLEFAKKFGLRIISIEDLIKYRMKNEILVRRVAQAKLPTKYGNFEIVGYEEILTRKQHVALIKGDINK-EPVLVRIHSECLTGDILGSLRCDCGDQLHAAMERIGQEG-GVLVYLR-QEGRGIGLLNKIKAYHLQDQGLDTVEANIKLGFPPDLREYSIAAQILKDIGVKKIRIMTNNPQKIMELSDYGLDVVERVSIEICPNHYNEKYLKTKKERMGHL 392          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_CORAM (Riboflavin biosynthesis protein ribBA OS=Corynebacterium ammoniagenes GN=ribBA PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.203e-59
Identity = 111/222 (50.00%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKG---DIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            LR F+   +LK+ISI  LI +RR  +  V R+   ++PT +G FTA  Y+  +DG EH+A++ G   ++   +D+ VRVHSECLTGD+F S RCDCG QL  +M+ I+ AG+G+++YLRGHEGRGIGL  KL+AY+LQD G DTV+AN E GLP D+REY +  Q+LRDLG+++  L+TNNP K  GL+G+G+  +   P+      +N  YL TKR +M H
Sbjct:  187 LRRFSDEHDLKMISIEQLIEWRRHNETQVRRTVETQLPTDFGSFTALGYKHEIDGQEHVALIAGGVEELNGAEDVFVRVHSECLTGDVFHSRRCDCGQQLHQSMEIIQEAGQGIIIYLRGHEGRGIGLLAKLKAYSLQDSGLDTVDANLEQGLPEDAREYSVAGQILRDLGIKSANLLTNNPHKGEGLRGFGVEASAHTPVEIEPNADNIDYLRTKRDRMNH 408          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_BACTN (Riboflavin biosynthesis protein ribBA OS=Bacteroides thetaiotaomicron GN=ribBA PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.330e-58
Identity = 116/219 (52.97%), Postives = 149/219 (68.04%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            LR  A    LK+ISI DLI YR K++ +V++     +PT  G F    +R   +G+EH+A+ KG   + + ILVRVHS C TGDI GS RCDCG+QL  AM+ IE  G+GV+VYL   EGRGIGL  K++AY LQ+DG DTV+AN  LG   D R+YG+GAQ+LR+LGV  MKL+TNNP K VGL+ YGL +   VP+ T     N+RYL TK+ +MGH
Sbjct:  181 LRAMADEHGLKLISIHDLIAYRLKQESIVEKGVEVNMPTEHGMFRLIPFRQKSNGLEHMAIFKGTWNEDEPILVRVHSSCATGDILGSHRCDCGEQLHKAMEMIEKEGKGVVVYLN-QEGRGIGLMEKMKAYKLQEDGMDTVDANLCLGHLADERDYGVGAQILRELGVHKMKLLTNNPVKRVGLEAYGLEIVENVPVETVPNPYNERYLRTKKERMGH 398          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_CYTH3 (Riboflavin biosynthesis protein ribBA OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ribBA PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.738e-58
Identity = 113/219 (51.60%), Postives = 146/219 (66.67%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            L++ A + NLK+ISI DLI YR   + LV R     +PT  G F    +R I  G  H+A++KG     + ++VRVHS C+TGDIFGS RCDCG QL  AM+ I+  G+GV++Y+   EGRGIGL +KL+AY LQ+ GRDTVEAN ELG  +D R+YG GAQ+LRDL +  ++L+TNNP K   L GYGL +   VP+  P    N  YL+TKR KMGH
Sbjct:  182 LKQIATKFNLKLISIKDLIEYRLTHESLVKREIGVDMPTNLGDFDLIAFRQISTGEVHLALIKGTWEKDEPVMVRVHSSCVTGDIFGSCRCDCGPQLHKAMEMIQQEGKGVILYMN-QEGRGIGLLNKLKAYKLQEQGRDTVEANLELGFKMDQRDYGTGAQILRDLNISKLRLITNNPVKRAALAGYGLEITEAVPIEIPSNPHNLEYLKTKRDKMGH 399          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_UNCTG (Riboflavin biosynthesis protein ribBA OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=ribBA PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.871e-58
Identity = 110/220 (50.00%), Postives = 153/220 (69.55%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L +FAK+ +L II+I +L+ YRR+ +K +       +PT +G F    +  ++    HIA+VKG + + Q++LVRVHS C TGDIF S RCDCGDQL  A++ +  A +GV++Y+   EGRGIGL +KL+AY LQ+ G DTVEAN+ LG   D R+YGIGAQML +LG++++ LMTNNP K  GL+ YGL +  RVPL     K N++YL+TK+ KMGH+
Sbjct:  181 LIKFAKKHDLHIITIGELVNYRRRTEKFISEIVNVDLPTRYGDFKLVLFEDLITKDSHIAVVKGVVKNRQNVLVRVHSSCETGDIFHSLRCDCGDQLETALKAVGEAEQGVVLYIH-QEGRGIGLANKLKAYRLQEKGMDTVEANKALGFDPDLRDYGIGAQMLSELGIKSINLMTNNPGKINGLESYGLKITKRVPLEISPSKSNEKYLKTKKEKMGHM 399          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_PORGI (Riboflavin biosynthesis protein ribBA OS=Porphyromonas gingivalis GN=ribBA PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.471e-57
Identity = 111/219 (50.68%), Postives = 151/219 (68.95%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            L E +KR  LKII+I DLI YR K++ +V++     +PT +G F    +R   +G+EHIA+ KG   + + ILVR+HS C TGDIFGS RCDCG QL  AM++IE  G+G ++YL   EGRGIGL  K++AY LQ+ G DT++AN  LG   D R+YGIGAQ+LR LG++ M+LMTNNP K +GL+ +GL +   +PL T   + N+ YL TK+ +MGH
Sbjct:  182 LWEVSKRFGLKIIAIKDLIAYRLKQESIVEKGVEVDMPTEYGHFRLIPFRQKSNGLEHIALFKGTWDENEPILVRMHSSCATGDIFGSMRCDCGGQLLQAMEKIEKEGKGAIIYL-NQEGRGIGLMEKMKAYKLQEQGMDTIDANLCLGHKADERDYGIGAQILRLLGIKKMRLMTNNPVKRIGLEAFGLEIVENIPLETAPNRYNEFYLRTKKERMGH 399          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_PORG3 (Riboflavin biosynthesis protein ribBA OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=ribBA PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.471e-57
Identity = 111/219 (50.68%), Postives = 151/219 (68.95%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            L E +KR  LKII+I DLI YR K++ +V++     +PT +G F    +R   +G+EHIA+ KG   + + ILVR+HS C TGDIFGS RCDCG QL  AM++IE  G+G ++YL   EGRGIGL  K++AY LQ+ G DT++AN  LG   D R+YGIGAQ+LR LG++ M+LMTNNP K +GL+ +GL +   +PL T   + N+ YL TK+ +MGH
Sbjct:  182 LWEVSKRFGLKIIAIKDLIAYRLKQESIVEKGVEVDMPTEYGHFRLIPFRQKSNGLEHIALFKGTWDENEPILVRMHSSCATGDIFGSMRCDCGGQLLQAMEKIEKEGKGAIIYL-NQEGRGIGLMEKMKAYKLQEQGMDTIDANLCLGHKADERDYGIGAQILRLLGIKKMRLMTNNPVKRIGLEAFGLEIVENIPLETAPNRYNEFYLRTKKERMGH 399          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_BURMA (GTP cyclohydrolase-2 OS=Burkholderia mallei GN=ribA PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.509e-57
Identity = 104/189 (55.03%), Postives = 140/189 (74.07%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 664
            + A +PT +G FT+Y +R      EH+A+V GD+ +   +L R+HSECLTGD+FGS RCDCG+QL L+++ I A GRGVL+YLRGHEGRGIGL +K+RAY LQ+ GRDTVEAN +LGLP D+REY   A +LR L V +++LM+NNP K+  L  +G+ V  RV L  P+++EN+RY+ TK+ K GH Y
Sbjct:    5 ATATLPTRYGTFTSYAFRVAGGDAEHLALVMGDVAEQPSVLTRLHSECLTGDVFGSYRCDCGEQLDLSLRYIAAEGRGVLLYLRGHEGRGIGLSNKIRAYALQEQGRDTVEANLDLGLPDDAREYDSAAAILRILKVTSVRLMSNNPKKFDTLARHGIPVCERVALAVPVREENERYIRTKQLKFGHYY 193          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_PARD8 (Riboflavin biosynthesis protein ribBA OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ribBA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.277e-57
Identity = 111/220 (50.45%), Postives = 151/220 (68.64%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L E AK+ ++KII I DLI YR + + +V+      +PT +G F    +R   +G+EHIA++KG     + ILVRVHS C TGDIFGS RC+CG+QL  AM++I+  G+GV+VYL   EGRGIGL  K++AY LQ+DG DTV+AN  LG   D R+YG+GAQ+LR +GV  M+LM+NNP K VGL+ YGL V   VP+       N+ Y++TK+ +MGH+
Sbjct:  182 LIEVAKKFDIKIICIKDLIAYRLRTESIVENGVEVDLPTEYGHFRLIPFRQKSNGLEHIALIKGKFEKDEPILVRVHSSCATGDIFGSMRCECGEQLHEAMRRIDQEGKGVIVYLN-QEGRGIGLMEKMKAYKLQEDGLDTVDANLHLGHQADERDYGVGAQILRHIGVTKMRLMSNNPVKRVGLEAYGLEVVENVPIEVKPNPYNEFYMKTKKERMGHV 400          
The following BLAST results are available for this feature:
BLAST of CX070216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
RIBBA_THEPX1.088e-6055.00Riboflavin biosynthesis protein ribBA OS=Thermoana... [more]
RIBBA_THEP39.214e-6055.00Riboflavin biosynthesis protein ribBA OS=Thermoana... [more]
RIBBA_CORAM1.203e-5950.00Riboflavin biosynthesis protein ribBA OS=Corynebac... [more]
RIBBA_BACTN1.330e-5852.97Riboflavin biosynthesis protein ribBA OS=Bacteroid... [more]
RIBBA_CYTH31.738e-5851.60Riboflavin biosynthesis protein ribBA OS=Cytophaga... [more]
RIBBA_UNCTG3.871e-5850.00Riboflavin biosynthesis protein ribBA OS=Unculture... [more]
RIBBA_PORGI1.471e-5750.68Riboflavin biosynthesis protein ribBA OS=Porphyrom... [more]
RIBBA_PORG31.471e-5750.68Riboflavin biosynthesis protein ribBA OS=Porphyrom... [more]
RIBA_BURMA2.509e-5755.03GTP cyclohydrolase-2 OS=Burkholderia mallei GN=rib... [more]
RIBBA_PARD83.277e-5750.45Riboflavin biosynthesis protein ribBA OS=Parabacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15E03-J5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070216 ID=CX070216; Name=CX070216; organism=Citrus sinensis; type=EST; length=790bp
GCTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTG
ATTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCT
GCTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAG
ATCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTG
GGGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGA
GATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGC
AATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTG
GTCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAAC
TTGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATT
GCCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATC
TTGGTGTTCGAACAATGAAGCTGATGACAAATAACCCTTCGAAGTATGTT
GGACTCAAGGGTTATGGTTTGGCAGTTGCAGGAAGGGTTCCCCTAATAAC
TCCCATTAAAAAGGAAAACAAGAGATATCTGGAGACTAAACGTGCTAAAA
TGGGTCACATTTATGGGTTAGAATCTAATGGCCGGTTAACAAATCTCATT
AACGTTAACGGTAAGCCGAGTATCAAATCTTCATCTGATACTGTATCTGA
CTCGTAAGCTGCACTAATTTACTTGGTTTGGACACGTGAT
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