CX070216

Overview
NameCX070216
Unique NameCX070216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_PSEPG (GTP cyclohydrolase-2 OS=Pseudomonas putida (strain GB-1) GN=ribA PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.285e-49
Identity = 101/195 (51.79%), Postives = 126/195 (64.62%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNG 682
            +A+++PT +  FT + +     G EH+ +  GDI DGQ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y +   ML  LGV++++LMTNNP K   L    + VA RVPL T     N+ YL TK  K+GH+ G E  G
Sbjct:    7 AASKLPTPFATFTMHGFLDEATGREHVVLSLGDIADGQPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAMCLPMLEHLGVKSLRLMTNNPRKVKALTDMNIVVAERVPLHTGHNPHNRYYLATKAGKLGHMLGNEHQG 200          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_PSEPW (GTP cyclohydrolase-2 OS=Pseudomonas putida (strain W619) GN=ribA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.603e-49
Identity = 101/197 (51.27%), Postives = 127/197 (64.47%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRL 688
            +A+++PT +  FT + +     G EH+ +  GDI DG+ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML  LGV++++LMTNNP K   L    + VA RVPL T     N+ YL TK  K+GH+ G E  G +
Sbjct:    7 AASKLPTPFATFTMHGFLDEATGREHVVLSLGDIADGEPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLEHLGVKSLRLMTNNPRKVKALTDMNIKVAERVPLHTGHNPHNRYYLATKADKLGHMLGNEHQGEV 202          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_PSEA7 (GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa (strain PA7) GN=ribA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.603e-49
Identity = 100/190 (52.63%), Postives = 127/190 (66.84%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYG 667
            +A+++PT +G FT + +     G EH+A+  GDI DG  +L R+HSECLTGD   S RCDCG QL  A+  I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEAN +LG   D R+Y +   ML  LGV +++LMTNNP K   L+ Y + VA RVPL   + K N+RYL TK  K+GH+ G
Sbjct:    7 AASKLPTPFGEFTMHGFLDEESGKEHVALTMGDIADGAPVLGRLHSECLTGDALFSLRCDCGFQLEGALAAIAEEGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANLQLGFGADQRDYAMCQPMLAHLGVSSLRLMTNNPRKVKALESYAVTVAERVPLQKGLNKHNRRYLATKAGKLGHMLG 195          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_PSEAE (GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa GN=ribA PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.318e-49
Identity = 100/190 (52.63%), Postives = 127/190 (66.84%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYG 667
            +A+++PT +G FT + +     G EH+A+  GDI DG  +L R+HSECLTGD   S RCDCG QL  A+  I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEAN +LG   D R+Y +   ML  LGV +++LMTNNP K   L+ Y + VA RVPL   + K N+RYL TK  K+GH+ G
Sbjct:    7 AASKLPTPFGEFTMHGFLDEESGKEHVALSMGDIADGAPVLGRLHSECLTGDALFSLRCDCGFQLEGALAAIAEEGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANLQLGFGADQRDYAMCQPMLAHLGVSSLRLMTNNPRKVKALESYAITVAERVPLQKGLNKHNRRYLATKAGKLGHMLG 195          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_PSEAB (GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ribA PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.318e-49
Identity = 100/190 (52.63%), Postives = 127/190 (66.84%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYG 667
            +A+++PT +G FT + +     G EH+A+  GDI DG  +L R+HSECLTGD   S RCDCG QL  A+  I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEAN +LG   D R+Y +   ML  LGV +++LMTNNP K   L+ Y + VA RVPL   + K N+RYL TK  K+GH+ G
Sbjct:    7 AASKLPTPFGEFTMHGFLDEESGKEHVALSMGDIADGAPVLGRLHSECLTGDALFSLRCDCGFQLEGALAAIAEEGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANLQLGFGADQRDYAMCQPMLAHLGVSSLRLMTNNPRKVKALESYAITVAERVPLQRGLNKHNRRYLATKAGKLGHMLG 195          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_PSEA8 (GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa (strain LESB58) GN=ribA PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.318e-49
Identity = 100/190 (52.63%), Postives = 127/190 (66.84%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYG 667
            +A+++PT +G FT + +     G EH+A+  GDI DG  +L R+HSECLTGD   S RCDCG QL  A+  I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEAN +LG   D R+Y +   ML  LGV +++LMTNNP K   L+ Y + VA RVPL   + K N+RYL TK  K+GH+ G
Sbjct:    7 AASKLPTPFGEFTMHGFLDEESGKEHVALSMGDIADGAPVLGRLHSECLTGDALFSLRCDCGFQLEGALAAIAEEGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANLQLGFGADQRDYAMCQPMLAHLGVSSLRLMTNNPRKVKALESYAITVAERVPLQKGLNKHNRRYLATKAGKLGHMLG 195          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_PSEFS (GTP cyclohydrolase-2 OS=Pseudomonas fluorescens (strain SBW25) GN=ribA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.557e-49
Identity = 103/197 (52.28%), Postives = 125/197 (63.45%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRL 688
            +A+++PT +  FT   +     G EH+ +  GDI DG  +L RVHSECLTGD   S RCDCG QL  AM+ I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML  LGV +++LMTNNP K   L   G+ VA RVPL T     NK YL TK +K+ H+ G E  G +
Sbjct:    7 AASKLPTPFATFTMNGFLEEATGREHVVLSLGDIADGAPVLGRVHSECLTGDALFSQRCDCGSQLEAAMRAIAREGRGVLLYLR-QEGRGIGLMNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLEHLGVSSLRLMTNNPRKVKALTEMGITVAERVPLHTGHNPHNKLYLATKASKLDHMMGNEHQGEV 202          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_PSESM (GTP cyclohydrolase-2 OS=Pseudomonas syringae pv. tomato GN=ribA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.630e-48
Identity = 100/192 (52.08%), Postives = 125/192 (65.10%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLE 673
            +A+++PT +  F  + +     G EH+ +  GD+ DG  +L RVHSECLTGD   S RCDCG QL  AM+ I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML+ LGV++++LMTNNP K   L   G+ VA RVPL T     N+ YL TK  K+GH+ G E
Sbjct:    7 AASKLPTPFAEFAMHGFIESATGREHVVLSLGDVADGAPVLGRVHSECLTGDALFSQRCDCGSQLEAAMRAIATEGRGVLLYLR-QEGRGIGLMNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLQHLGVQSLRLMTNNPRKVKALTDMGINVAERVPLHTGQNPHNRLYLATKAGKLGHMMGNE 197          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_PSEE4 (GTP cyclohydrolase-2 OS=Pseudomonas entomophila (strain L48) GN=ribA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.195e-48
Identity = 99/197 (50.25%), Postives = 127/197 (64.47%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRL 688
            +A+++PT +  FT + +     G EH+ +  GDI DG+ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y +   ML  LGV++++LMTNNP K   L    + VA RVPL T     N+ YL TK  K+GH+ G +  G +
Sbjct:    7 AASKLPTPFAIFTMHGFLDEATGREHVVLSLGDIADGEPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAMCLPMLEHLGVKSLRLMTNNPRKVKALTDMSIKVAERVPLHTGHNPHNRLYLATKADKLGHMMGNKHQGEV 202          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_HAHCH (GTP cyclohydrolase-2 OS=Hahella chejuensis (strain KCTC 2396) GN=ribA PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.015e-47
Identity = 96/188 (51.06%), Postives = 123/188 (65.43%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            ++ ++PT +G F  + ++ +    EHIA+  GDIGDG  +L R HSECLTGD   S RCDCG QL  A++ I A GRG+L+YLR  EGRGIGL +K+RAYNLQD G DTVEANE+LG   D R+Y +   ML  LG+  ++LMTNNP K   L   G+ V  RVPL       N+ YL TK  K+GH+
Sbjct:    7 ASCKLPTPFGVFDMHGFQEVGTQKEHIALTLGDIGDGASVLARTHSECLTGDALFSMRCDCGYQLDEALRSIAAEGRGILLYLR-QEGRGIGLLNKIRAYNLQDQGADTVEANEQLGFAADMRDYSMCKPMLYHLGISRIRLMTNNPRKVDSLTKLGIEVVERVPLEVGRNPHNRNYLATKAGKLGHL 193          
The following BLAST results are available for this feature:
BLAST of CX070216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
RIBA_PSEPG3.285e-4951.79GTP cyclohydrolase-2 OS=Pseudomonas putida (strain... [more]
RIBA_PSEPW5.603e-4951.27GTP cyclohydrolase-2 OS=Pseudomonas putida (strain... [more]
RIBA_PSEA75.603e-4952.63GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa (st... [more]
RIBA_PSEAE7.318e-4952.63GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa GN=... [more]
RIBA_PSEAB7.318e-4952.63GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa (st... [more]
RIBA_PSEA87.318e-4952.63GTP cyclohydrolase-2 OS=Pseudomonas aeruginosa (st... [more]
RIBA_PSEFS9.557e-4952.28GTP cyclohydrolase-2 OS=Pseudomonas fluorescens (s... [more]
RIBA_PSESM1.630e-4852.08GTP cyclohydrolase-2 OS=Pseudomonas syringae pv. t... [more]
RIBA_PSEE46.195e-4850.25GTP cyclohydrolase-2 OS=Pseudomonas entomophila (s... [more]
RIBA_HAHCH4.015e-4751.06GTP cyclohydrolase-2 OS=Hahella chejuensis (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15E03-J5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070216 ID=CX070216; Name=CX070216; organism=Citrus sinensis; type=EST; length=790bp
GCTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTG
ATTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCT
GCTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAG
ATCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTG
GGGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGA
GATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGC
AATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTG
GTCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAAC
TTGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATT
GCCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATC
TTGGTGTTCGAACAATGAAGCTGATGACAAATAACCCTTCGAAGTATGTT
GGACTCAAGGGTTATGGTTTGGCAGTTGCAGGAAGGGTTCCCCTAATAAC
TCCCATTAAAAAGGAAAACAAGAGATATCTGGAGACTAAACGTGCTAAAA
TGGGTCACATTTATGGGTTAGAATCTAATGGCCGGTTAACAAATCTCATT
AACGTTAACGGTAAGCCGAGTATCAAATCTTCATCTGATACTGTATCTGA
CTCGTAAGCTGCACTAATTTACTTGGTTTGGACACGTGAT
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