CX070216

Overview
NameCX070216
Unique NameCX070216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_AERHH (GTP cyclohydrolase-2 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=ribA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.526e-46
Identity = 95/187 (50.80%), Postives = 125/187 (66.84%), Query Frame = 2
Query:  104 ARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIY 664
            +++PT WG FT   ++    G +H A+V GDI   + +L R+HSECLTGD   S RCDCG QL  A++ I  AGRGVL+Y+R  EGRGIGL +K+RAY+LQD G DTVEAN  LG   D R+Y I A ML+ L V+++KLMTNNP K   ++ +G+ VA RVPL       N+ YL TK  K+ H++
Sbjct:   10 SKLPTPWGTFTLVGFQETGTGKDHAALVMGDITGDEPVLGRIHSECLTGDALFSLRCDCGFQLQAALENIAKAGRGVLLYVR-QEGRGIGLLNKIRAYHLQDQGADTVEANVALGFAADMRDYTICADMLKQLEVKSLKLMTNNPRKMKAMESFGIPVAERVPLQEGRNPHNEFYLSTKANKLDHMF 195          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_ENTS8 (GTP cyclohydrolase-2 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ribA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.573e-46
Identity = 95/190 (50.00%), Postives = 123/190 (64.74%), Query Frame = 2
Query:   92 RSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            R + A++PT WG F    +  +  G +H+A+V GDI   + +L RVHSECLTGD   S RCDCG QL  A+  I  AGRGVL+Y R  EGR IGL +K+RAY LQD G DTVEAN +LG   D R++ + A M + LGV  ++L+TNNP K   L   G+ +  RVPLI     +N+ YL+TK AKMGH+
Sbjct:    5 RVAEAKLPTPWGDFLMVGFEELATGQDHVALVFGDISGTEPVLARVHSECLTGDALFSLRCDCGFQLEAALSHIAEAGRGVLLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVDEVRLLTNNPRKVEILTEAGINIVERVPLIVGRNPKNEHYLDTKAAKMGHL 193          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAW (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain MW2) GN=ribBA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.890e-46
Identity = 98/220 (44.55%), Postives = 142/220 (64.55%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L++F ++  LK+I+I DLI YR+K +  ++  +  ++PT +G F  Y +++     E + + KG I   ++  VR+HS CLTGDIF S RCDCG QL  +M+ I   G G+++YL   EGRGIGL +KLRAY L + G DTV AN  LG   D R+Y I AQ+L+   +  + L++NNPSK+ GLK YG+ +A R+ +I P    N  Y+ETK+ KMGH+
Sbjct:  177 LQKFKEKHQLKMITIDDLIEYRKKLEPEIEFKAKVKMPTDFGTFDMYGFKATYTDEEIVVLTKGAIRQHEN--VRLHSACLTGDIFHSQRCDCGAQLESSMKYINEHG-GMIIYLP-QEGRGIGLLNKLRAYELIEQGYDTVTANLALGFDEDLRDYHIAAQILKYFNIEHINLLSNNPSKFEGLKQYGIDIAERIEVIVPETVHNHDYMETKKIKMGHL 392          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAS (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain MSSA476) GN=ribBA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.890e-46
Identity = 98/220 (44.55%), Postives = 142/220 (64.55%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L++F ++  LK+I+I DLI YR+K +  ++  +  ++PT +G F  Y +++     E + + KG I   ++  VR+HS CLTGDIF S RCDCG QL  +M+ I   G G+++YL   EGRGIGL +KLRAY L + G DTV AN  LG   D R+Y I AQ+L+   +  + L++NNPSK+ GLK YG+ +A R+ +I P    N  Y+ETK+ KMGH+
Sbjct:  177 LQKFKEKHQLKMITIDDLIEYRKKLEPEIEFKAKVKMPTDFGTFDMYGFKATYTDEEIVVLTKGAIRQHEN--VRLHSACLTGDIFHSQRCDCGAQLESSMKYINEHG-GMIIYLP-QEGRGIGLLNKLRAYELIEQGYDTVTANLALGFDEDLRDYHIAAQILKYFNIEHINLLSNNPSKFEGLKQYGIDIAERIEVIVPETVHNHDYMETKKIKMGHL 392          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAR (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain MRSA252) GN=ribBA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.890e-46
Identity = 98/220 (44.55%), Postives = 142/220 (64.55%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L++F ++  LK+I+I DLI YR+K +  ++  +  ++PT +G F  Y +++     E + + KG I   ++  VR+HS CLTGDIF S RCDCG QL  +M+ I   G G+++YL   EGRGIGL +KLRAY L + G DTV AN  LG   D R+Y I AQ+L+   +  + L++NNPSK+ GLK YG+ +A R+ +I P    N  Y+ETK+ KMGH+
Sbjct:  177 LQKFKEKHKLKMITIDDLIEYRKKLEPEIEFKAKVKMPTDFGTFDMYGFKATYTDEEIVVLTKGAIRQHEN--VRLHSACLTGDIFHSQRCDCGAQLESSMKYINEHG-GMIIYLP-QEGRGIGLLNKLRAYELIEQGYDTVTANLALGFDEDLRDYHIAAQILKYFNIEHINLLSNNPSKFEGLKQYGIDIAERIEVIVPETVHNHDYMETKKIKMGHL 392          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_STAAC (Riboflavin biosynthesis protein ribBA OS=Staphylococcus aureus (strain COL) GN=ribBA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.890e-46
Identity = 98/220 (44.55%), Postives = 142/220 (64.55%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L++F ++  LK+I+I DLI YR+K +  ++  +  ++PT +G F  Y +++     E + + KG I   ++  VR+HS CLTGDIF S RCDCG QL  +M+ I   G G+++YL   EGRGIGL +KLRAY L + G DTV AN  LG   D R+Y I AQ+L+   +  + L++NNPSK+ GLK YG+ +A R+ +I P    N  Y+ETK+ KMGH+
Sbjct:  177 LQKFKEKHQLKMITIDDLIEYRKKLEPEIEFKAKVKMPTDFGTFDMYGFKATYTDEEIVVLTKGAIRQHEN--VRLHSACLTGDIFHSQRCDCGAQLESSMKYINEHG-GMIIYLP-QEGRGIGLLNKLRAYELIEQGYDTVTANLALGFDEDLRDYHIAAQILKYFNIEHINLLSNNPSKFEGLKQYGIDIAERIEVIVPETVHNHDYMETKKIKMGHL 392          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_SHELP (GTP cyclohydrolase-2 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ribA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.292e-45
Identity = 93/188 (49.47%), Postives = 123/188 (65.43%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            + +++PT WG F  + +     G EH+A+  G++   Q IL R+HSECLTGD   S RCDCG QL  AMQ I  AG+G ++YLR  EGRGIGL +K+RAY LQD G +TVEANE LG   D R+Y +   ML  +GV+ +KLMTNNP K   +K  G+AV  RVPL     + N+ YL+TK  ++GH+
Sbjct:    7 ATSKLPTPWGVFAMHGFEDTETGKEHVALTFGELDASQPILGRIHSECLTGDALFSLRCDCGFQLQTAMQNIAEAGQGFILYLR-QEGRGIGLLNKIRAYELQDQGANTVEANERLGFAADMRKYDMIKPMLEKIGVQQVKLMTNNPRKVKAMKELGIAVIERVPLQVGKNRYNEAYLKTKSTELGHM 193          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_SHEAM (GTP cyclohydrolase-2 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=ribA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.292e-45
Identity = 94/192 (48.96%), Postives = 123/192 (64.06%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLE 673
            + +++PT WG F  + +     G EH+A+  GD+     +L R+HSECLTGD   S RCDCG QL  AMQ+I   GRG ++YLR  EGRGIGL +K+RAY LQD G +TVEANE+LG   D R+Y + A ML  LG+  +KLMTNNP K   +K  G+ V  RVPL     + N+ YL+TK  K+GH+   E
Sbjct:    7 ATSKLPTPWGVFAMHGFEDSETGKEHVALTFGDLSGDAPVLGRIHSECLTGDALFSLRCDCGFQLQTAMQRIAETGRGFILYLR-QEGRGIGLLNKIRAYELQDKGANTVEANEQLGFAADMRKYDMIAPMLAHLGISRVKLMTNNPRKVNAMKDVGMDVVERVPLQVGKNRYNEAYLKTKSDKLGHMMSEE 197          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_TOLAT (GTP cyclohydrolase-2 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=ribA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.203e-45
Identity = 95/188 (50.53%), Postives = 124/188 (65.96%), Query Frame = 2
Query:   98 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            ++A +PT WG FT   ++    G +H+A+  GDI     +L R+HSECLTGD   S RCDCG QL  A+Q+I    RGVL+Y+R  EGRGIGL +K+ AY+LQD G DTVEANE LG   D R+Y I A ML+ L V++++LMTNNP K   ++ YG+ VA RVPL       N+ YL TK  K+GH+
Sbjct:    8 ASAELPTPWGVFTMTGFKEEATGKDHVALSMGDITTDAPVLARIHSECLTGDALFSLRCDCGFQLQAALQRIAKEERGVLLYVR-QEGRGIGLLNKIHAYHLQDQGADTVEANEALGFAPDLRDYTICADMLKLLDVKSLRLMTNNPRKIKAMEKYGIPVAERVPLEEGKNAYNEFYLATKAGKLGHM 194          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBA_TERTT (GTP cyclohydrolase-2 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=ribA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.203e-45
Identity = 91/192 (47.40%), Postives = 120/192 (62.50%), Query Frame = 2
Query:   86 VDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            ++   ++++PT WG F  + +       EH+ +  GD+   + +LVR+HSECLTGD   S RCDCG QL  AM +I   GRG + YLR  EGRGIGL +K+RAY+LQD G DTVEANE LG   D R+Y +   M   +G+  +KLMTNNP K   L G G+ +A R+P  T     N  YLETKR K+GH+
Sbjct:    3 IEYVESSKLPTAWGMFEMHGFTDSETDKEHLVLSMGDLAGDEPVLVRIHSECLTGDALFSLRCDCGAQLQAAMHRISIEGRGAIFYLR-QEGRGIGLVNKIRAYHLQDKGADTVEANEALGFGADMRDYSMLKPMFEKMGISRVKLMTNNPRKIDALIGLGIDIAERLPHETGRNPHNSHYLETKRGKLGHL 193          
The following BLAST results are available for this feature:
BLAST of CX070216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
RIBA_AERHH1.526e-4650.80GTP cyclohydrolase-2 OS=Aeromonas hydrophila subsp... [more]
RIBA_ENTS87.573e-4650.00GTP cyclohydrolase-2 OS=Enterobacter sakazakii (st... [more]
RIBBA_STAAW9.890e-4644.55Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAAS9.890e-4644.55Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAAR9.890e-4644.55Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBBA_STAAC9.890e-4644.55Riboflavin biosynthesis protein ribBA OS=Staphyloc... [more]
RIBA_SHELP1.292e-4549.47GTP cyclohydrolase-2 OS=Shewanella loihica (strain... [more]
RIBA_SHEAM1.292e-4548.96GTP cyclohydrolase-2 OS=Shewanella amazonensis (st... [more]
RIBA_TOLAT2.203e-4550.53GTP cyclohydrolase-2 OS=Tolumonas auensis (strain ... [more]
RIBA_TERTT2.203e-4547.40GTP cyclohydrolase-2 OS=Teredinibacter turnerae (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15E03-J5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070216 ID=CX070216; Name=CX070216; organism=Citrus sinensis; type=EST; length=790bp
GCTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTG
ATTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCT
GCTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAG
ATCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTG
GGGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGA
GATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGC
AATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTG
GTCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAAC
TTGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATT
GCCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATC
TTGGTGTTCGAACAATGAAGCTGATGACAAATAACCCTTCGAAGTATGTT
GGACTCAAGGGTTATGGTTTGGCAGTTGCAGGAAGGGTTCCCCTAATAAC
TCCCATTAAAAAGGAAAACAAGAGATATCTGGAGACTAAACGTGCTAAAA
TGGGTCACATTTATGGGTTAGAATCTAATGGCCGGTTAACAAATCTCATT
AACGTTAACGGTAAGCCGAGTATCAAATCTTCATCTGATACTGTATCTGA
CTCGTAAGCTGCACTAATTTACTTGGTTTGGACACGTGAT
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