CX070170

Overview
NameCX070170
Unique NameCX070170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PHSG_SHIFL (Glycogen phosphorylase OS=Shigella flexneri GN=glgP PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.171e-58
Identity = 117/252 (46.43%), Postives = 167/252 (66.27%), Query Frame = 2
Query:   17 AKSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYL 766
            AK  NK ++  +I ++    V+P A+FD+Q+KRIHEYKRQLMN+L ++ RY ++K     +  AK+VPRV IFGGKA + Y  AK I+  I DV   +N+DP+IGD LKV+F+P+Y+VS+A+L+IPA++LS+ IS AG EASGTSNMKFA+NG + IGTLDGANVE+   VG +N F+FG  A E+  LR++  +    +  D    +V   + SGVF   +       ++    FG  D++ V  D+ SY+
Sbjct:  519 AKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIK----ADPDAKWVPRVNIFGGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLDHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRYRDLVDSLINFG--DHYQVLADYRSYV 764          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PHSG_ECOLI (Glycogen phosphorylase OS=Escherichia coli (strain K12) GN=glgP PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.171e-58
Identity = 117/252 (46.43%), Postives = 167/252 (66.27%), Query Frame = 2
Query:   17 AKSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYL 766
            AK  NK ++  +I ++    V+P A+FD+Q+KRIHEYKRQLMN+L ++ RY ++K     +  AK+VPRV IFGGKA + Y  AK I+  I DV   +N+DP+IGD LKV+F+P+Y+VS+A+L+IPA++LS+ IS AG EASGTSNMKFA+NG + IGTLDGANVE+   VG +N F+FG  A E+  LR++  +    +  D    +V   + SGVF   +       ++    FG  D++ V  D+ SY+
Sbjct:  519 AKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIK----ADPDAKWVPRVNIFGGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLDHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRYRDLVDSLINFG--DHYQVLADYRSYV 764          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PHSG_YEAST (Glycogen phosphorylase OS=Saccharomyces cerevisiae GN=GPH1 PE=1 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 1.078e-57
Identity = 128/265 (48.30%), Postives = 168/265 (63.40%), Query Frame = 2
Query:    5 QFRAAKSNNKMKVVSFIK-EKTGYSVS-----PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEM----SAVERKAKFVPR-VCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYL 766
            ++   K NNK+++V  IK E  G  +       D +FD+QVKRIHEYKRQ +N+ GI+YRY  MK M    +++E  AK  PR V IFGGK+   Y  AK I+K I  V   VN+D  I  LLKV+FV DYNVS AE++IPAS+LS+HISTAG EASGTSNMKF MNG ++IGT+DGANVEI +E+GE+N FLFG  +  +  LR           +  + V  +++SG F   N +E    ++  +  G  DY+LV  DF SYL
Sbjct:  589 KWNQVKLNNKIRLVDLIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVAKKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGNLSENVEELRYNHQYHPQDLPSSLDSVLSYIESGQFSPENPNEFKPLVDSIKYHG--DYYLVSDDFESYL 851          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PHSM_ECOLI (Maltodextrin phosphorylase OS=Escherichia coli (strain K12) GN=malP PE=1 SV=7)

HSP 1 Score: 212.231 bits (539), Expect = 2.484e-54
Identity = 118/259 (45.56%), Postives = 170/259 (65.64%), Query Frame = 2
Query:    5 QFRAAKSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEI-AGLRKERSEGKF-VPDARFEEVKKFVKSGVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYL 766
            Q+R  K  NK+++  F+K +TG  ++P A+FDIQ+KR+HEYKRQ +N+L I+  YK+++E    +R    VPRV +FG KA   Y  AK I+  I  V   +N+DP +GD LKV+F+PDY VS AE LIPA+++S+ ISTAG EASGT NMK A+NG + +GTLDGANVEI ++VGEEN F+FG    ++ A L K     K+   D   + V K ++SG +     + +D+++ S+ G +G    D +LV  DF +Y+
Sbjct:  499 QYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADR----VPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSI-GKQG---GDPYLVMADFAAYV 749          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PHSG_PASMU (Glycogen phosphorylase OS=Pasteurella multocida GN=glgP PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.238e-54
Identity = 114/254 (44.88%), Postives = 162/254 (63.78%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYL 766
            K NNK+K+ ++IK + G  V P+A+FD+QVKRIHEYKRQ++N+L I+ RY  M E      +  +VPRV I  GKA + Y  AK+ +  I DV   +NHD  +   LKV+F+P+Y+VS+AEL+IPA+++S+ IS AG EASGTSNMKFA+NG + IGTLDGANVEI   VG+++ F+FG    ++  LR+   R    +  D    +V   + SG F    +  Y +L+ SL+ +      DY+    DF SY+
Sbjct:  525 KYNNKVKLANYIKNELGVEVDPNALFDVQVKRIHEYKRQILNVLHIIARYNAMLE----NPEKDWVPRVFILAGKAASAYYAAKQTINLINDVANIINHDERLQGRLKVVFIPNYSVSLAELIIPAADISEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEILDNVGQDHIFIFGNTVEQVESLRRHGYRPFDYYQNDEELRKVVDQIISGRFSPTDANRYHQLLQSLQYH------DYYQAFADFRSYV 768          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PHSG_CHLTR (Glycogen phosphorylase OS=Chlamydia trachomatis GN=glgP PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.992e-53
Identity = 111/255 (43.53%), Postives = 161/255 (63.14%), Query Frame = 2
Query:    5 QFRAAKSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE-RSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYL 766
            ++R  K  NK ++ + I ++ G +V+P ++FD  +KRIHEYKRQLMNIL ++Y Y +++  S      + VP   IFGGKA   Y  AK I+K I +V A VN+DP++ D LKVIF P+Y VS+AE +IPA++LS+ ISTAGMEASGT NMKFA+NG + IGT+DGAN+E+ + +G+E+ F+FG    EI+ LRKE   +G    +   +E+   +    F   + D     +  N    + D F V  D  +Y+
Sbjct:  516 EWRNIKIQNKEELAARIYKELGVTVNPQSIFDCHIKRIHEYKRQLMNILRVIYFYNEIRNGSG-----EIVPTTVIFGGKAAPGYAMAKLIIKLINNVAAVVNNDPKVNDQLKVIFWPNYRVSLAEAIIPATDLSEQISTAGMEASGTGNMKFALNGALTIGTMDGANIEMAEHIGKEHMFIFGLLEEEISELRKEYYPQGICNANPTIQEILDMIAQAKFSQEDKDLFKPIV--NRLLNEGDPFFVLADLEAYI 763          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PYGL_BOVIN (Glycogen phosphorylase, liver form OS=Bos taurus GN=PYGL PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.037e-52
Identity = 102/196 (52.04%), Postives = 137/196 (69.90%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGK 607
            K  NK+K   F++++    ++P +MFD+QVKRIHEYKRQL+N L +V  Y ++K+    + K  FVPR  I GGKA   Y  AK I+K IT V   VN+DP +G  LK+IF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K
Sbjct:  539 KQENKLKFSQFLEKEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVVTMYNRIKK----DPKKLFVPRTVIIGGKAAPGYYMAKLIIKLITSVAEVVNNDPVVGSKLKLIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIEDVAALDKKGYEAK 730          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PYGL_SHEEP (Glycogen phosphorylase, liver form OS=Ovis aries GN=PYGL PE=2 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 3.966e-52
Identity = 102/196 (52.04%), Postives = 136/196 (69.39%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGK 607
            K  NK+K   F++++    ++P +MFD+QVKRIHEYKRQL+N L +V  Y ++K+    + K  FVPR  I GGKA   Y  AK I+K IT V   VN+DP +G  LK+IF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF  NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K
Sbjct:  539 KQENKLKFSQFLEKEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVVTMYNRIKK----DPKKLFVPRTVIIGGKAAPGYYMAKLIIKLITSVAEVVNNDPMVGSKLKLIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMQNGALTIGTMDGANVEMAEEAGEENLFIFGMRVEDVAALDKKGYEAK 730          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PYGB_SHEEP (Glycogen phosphorylase, brain form OS=Ovis aries GN=PYGB PE=2 SV=3)

HSP 1 Score: 204.527 bits (519), Expect = 5.180e-52
Identity = 99/191 (51.83%), Postives = 136/191 (71.20%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE 592
            K  NK+K  +F++++ G  V+P +MFD+ VKRIHEYKRQL+N L +V  Y ++K+    +    FVPR  + GGKA   Y  AK+I+K +T +G  VNHDP +GD LKVIF+ +Y VS+AE +IPA++LSQ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E G EN F+FG R  ++  L ++
Sbjct:  539 KQENKVKFSAFLEKQYGVKVNPSSMFDVHVKRIHEYKRQLLNCLHVVTLYNRIKK----DPTQAFVPRTVMIGGKAAPGYHMAKKIIKLVTSIGDIVNHDPIVGDRLKVIFLENYRVSLAEKVIPAADLSQQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGAENLFIFGLRVEDVEALDRK 725          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PYGB_BOVIN (Glycogen phosphorylase, brain form OS=Bos taurus GN=PYGB PE=2 SV=3)

HSP 1 Score: 204.527 bits (519), Expect = 5.180e-52
Identity = 99/191 (51.83%), Postives = 136/191 (71.20%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE 592
            K  NK+K  +F++++ G  V+P +MFD+ VKRIHEYKRQL+N L +V  Y ++K+    +    FVPR  + GGKA   Y  AK+I+K +T +G  VNHDP +GD LKVIF+ +Y VS+AE +IPA++LSQ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E G EN F+FG R  ++  L ++
Sbjct:  539 KQENKVKFSAFLEKQYGVKVNPSSMFDVHVKRIHEYKRQLLNCLHVVTLYNRIKK----DPTQAFVPRTVMIGGKAAPGYHMAKKIIKLVTSIGNIVNHDPIVGDRLKVIFLENYRVSLAEKVIPAADLSQQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGAENLFIFGLRVEDVEALDRK 725          
The following BLAST results are available for this feature:
BLAST of CX070170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PHSG_SHIFL2.171e-5846.43Glycogen phosphorylase OS=Shigella flexneri GN=glg... [more]
PHSG_ECOLI2.171e-5846.43Glycogen phosphorylase OS=Escherichia coli (strain... [more]
PHSG_YEAST1.078e-5748.30Glycogen phosphorylase OS=Saccharomyces cerevisiae... [more]
PHSM_ECOLI2.484e-5445.56Maltodextrin phosphorylase OS=Escherichia coli (st... [more]
PHSG_PASMU4.238e-5444.88Glycogen phosphorylase OS=Pasteurella multocida GN... [more]
PHSG_CHLTR7.992e-5343.53Glycogen phosphorylase OS=Chlamydia trachomatis GN... [more]
PYGL_BOVIN3.037e-5252.04Glycogen phosphorylase, liver form OS=Bos taurus G... [more]
PYGL_SHEEP3.966e-5252.04Glycogen phosphorylase, liver form OS=Ovis aries G... [more]
PYGB_SHEEP5.180e-5251.83Glycogen phosphorylase, brain form OS=Ovis aries G... [more]
PYGB_BOVIN5.180e-5251.83Glycogen phosphorylase, brain form OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15B11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15B11-D21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070170 ID=CX070170; Name=CX070170; organism=Citrus sinensis; type=EST; length=767bp
ATCTCAGTTTAGGGCGGCAAAAAGTAACAACAAGATGAAGGTTGTGTCTT
TCATCAAAGAAAAAACAGGCTATTCTGTTAGCCCCGATGCAATGTTTGAC
ATCCAGGTGAAGCGCATCCATGAATACAAGCGACAATTGATGAATATCTT
GGGAATTGTTTACCGCTACAAAAAGATGAAAGAAATGAGTGCAGTAGAAA
GGAAGGCCAAGTTTGTACCAAGAGTTTGTATATTTGGAGGAAAAGCATTT
GCTACATATGTGCAAGCCAAGAGAATTGTGAAATTTATTACGGATGTTGG
GGCCACGGTTAATCATGATCCTGAAATAGGTGACTTATTGAAGGTTATTT
TTGTCCCTGATTACAATGTAAGTGTGGCTGAATTGCTTATACCTGCAAGT
GAGCTCTCACAACACATCAGTACTGCCGGGATGGAGGCTAGTGGTACCAG
TAACATGAAATTTGCAATGAATGGTTGCATTTTGATTGGAACCTTGGATG
GTGCCAATGTTGAAATACGGCAAGAGGTTGGAGAGGAGAACTTTTTCCTA
TTTGGTGCCAGAGCCCACGAGATTGCAGGATTGAGAAAAGAAAGATCTGA
GGGGAAATTTGTTCCCGACGCACGTTTTGAAGAAGTGAAGAAATTTGTCA
AATCTGGTGTTTTTGGTTCTTACAACTATGATGAACTAATGGGATCACTG
GAAGGAAATGAAGGTTTTGGCCAGGCAGATTATTTCCTCGTGGGCAAAGA
TTTCCCTAGTTACTTGG
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