CX070170

Overview
NameCX070170
Unique NameCX070170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PYGL_HUMAN (Glycogen phosphorylase, liver form OS=Homo sapiens GN=PYGL PE=1 SV=4)

HSP 1 Score: 204.142 bits (518), Expect = 6.765e-52
Identity = 102/196 (52.04%), Postives = 136/196 (69.39%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGK 607
            K  NK+K   F++ +    ++P +MFD+QVKRIHEYKRQL+N L ++  Y ++K+    + K  FVPR  I GGKA   Y  AK I+K IT V   VN+DP +G  LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K
Sbjct:  539 KQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKK----DPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAK 730          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PHSG_SYNY3 (Glycogen phosphorylase OS=Synechocystis sp. (strain PCC 6803) GN=glgP PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.765e-52
Identity = 118/257 (45.91%), Postives = 157/257 (61.09%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEG-----KFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYL 766
            K   K  +  +I  +T   V+PD++FD+QVKRIHEYKRQ +NIL +++ Y ++K    ++      PR  I+GGKA   Y  AK I+K I  V   VN+DP IGD LKVIF+PDYNV   + + PA++LS+ ISTAG EASGT NMKF+MNG + IGTLDGAN+EIR+EVG ENFFLFG    E+    K  +EG      +  +A  + V   + SG F   +   +  LM SL G       D +LV  DF +Y+
Sbjct:  537 KREVKQDLARYIHTRTDLVVNPDSLFDVQVKRIHEYKRQHLNILHVIHLYLQIKNNPNLD----VTPRTFIYGGKAAPGYFTAKLIIKLINSVADVVNNDPTIGDRLKVIFLPDYNVKFGQRVYPAADLSEQISTAGKEASGTGNMKFSMNGALTIGTLDGANIEIREEVGAENFFLFGLTTPEV---EKTLAEGYQPWEYYNNNANLKAVVDLINSGFFSHGDTALFRPLMDSLLGQ------DPYLVFADFQAYV 780          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PYGL_MOUSE (Glycogen phosphorylase, liver form OS=Mus musculus GN=Pygl PE=1 SV=3)

HSP 1 Score: 203.371 bits (516), Expect = 1.154e-51
Identity = 101/196 (51.53%), Postives = 136/196 (69.39%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGK 607
            K  NK+K   F++++    ++P +MFD+ VKRIHEYKRQL+N L ++  Y ++K+    + K  FVPR  I GGKA   Y  AK I+K IT V   VN+DP +G  LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K
Sbjct:  539 KQENKLKFSQFLEKEYKVKINPSSMFDVHVKRIHEYKRQLLNCLHVITMYNRIKK----DPKKFFVPRTVIIGGKAAPGYHMAKMIIKLITSVAEVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRVDDVAALDKKGYEAK 730          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PHSG_HAEIN (Glycogen phosphorylase OS=Haemophilus influenzae GN=glgP PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.154e-51
Identity = 109/254 (42.91%), Postives = 158/254 (62.20%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYL 766
            K  NK+K+  ++K + G  + P A+FD+QVKRIHEYKRQ++N+L I+ RY +M        +  + PRV I  GKA + Y  AK+ +  I DV   +N+D  +   LKV+F+P+Y+VS+A+L+IPA+++S+ IS AG EASGTSNMKFA+NG + +GTLDGANVEI + VGE+N F+FG    ++  LR+E  RS   +  DA+   V   +  G F       Y +L+      +G    DY+    DF SY+
Sbjct:  525 KFANKVKLAEYVKSELGVELDPHALFDVQVKRIHEYKRQMLNVLHIIARYNEM----LTNPEKDWQPRVFILAGKAASAYYAAKQTIHLINDVANVINNDERLKGRLKVVFIPNYSVSLAQLIIPAADISEQISLAGTEASGTSNMKFALNGALTLGTLDGANVEILENVGEDNIFIFGNTVEQVEQLRREGYRSFEYYQNDAQLRTVVDQIIEGKFSPEDPQRYHQLL------QGLQYHDYYQAFADFRSYV 768          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PYGL_RAT (Glycogen phosphorylase, liver form OS=Rattus norvegicus GN=Pygl PE=1 SV=5)

HSP 1 Score: 202.986 bits (515), Expect = 1.507e-51
Identity = 100/196 (51.02%), Postives = 136/196 (69.39%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGK 607
            K  NK+K   F++++    ++P +MFD+ VKRIHEYKRQL+N L ++  Y ++K+    + K  FVPR  I GGKA   Y  AK I+K +T V   VN+DP +G  LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K
Sbjct:  539 KQENKLKFSQFLEKEYKVKINPSSMFDVHVKRIHEYKRQLLNCLHVITMYNRIKK----DPKKFFVPRTVIIGGKAAPGYHMAKMIIKLVTSVAEVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRVDDVAALDKKGYEAK 730          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PYGM_BOVIN (Glycogen phosphorylase, muscle form OS=Bos taurus GN=PYGM PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 2.571e-51
Identity = 98/188 (52.13%), Postives = 136/188 (72.34%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGL 583
            K  NK+K  ++++++    ++P+++FDIQVKRIHEYKRQL+N L ++  Y ++K+    E    FVPR  + GGKA   Y  AK I+K IT +G  VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L
Sbjct:  539 KQENKLKFSAYLEKEYKVHINPNSLFDIQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFFVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVERL 722          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PYGM_SHEEP (Glycogen phosphorylase, muscle form OS=Ovis aries GN=PYGM PE=2 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 5.727e-51
Identity = 97/188 (51.60%), Postives = 136/188 (72.34%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGL 583
            K  NK+K  ++++++    ++P+++FDIQVKRIHEYKRQL+N L ++  Y ++K+    E    FVPR  + GGKA   Y  AK I++ IT +G  VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L
Sbjct:  539 KQENKLKFSAYLEKEYKVHINPNSLFDIQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFFVPRTVMIGGKAAPGYHMAKMIIRLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVERL 722          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PYGM_HUMAN (Glycogen phosphorylase, muscle form OS=Homo sapiens GN=PYGM PE=1 SV=6)

HSP 1 Score: 200.675 bits (509), Expect = 7.480e-51
Identity = 95/185 (51.35%), Postives = 133/185 (71.89%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEI 574
            K  NK+K  ++++ +    ++P+++FDIQVKRIHEYKRQL+N L ++  Y ++K     E    FVPR  + GGKA   Y  AK I++ +T +G  VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++
Sbjct:  539 KQENKLKFAAYLEREYKVHINPNSLFDIQVKRIHEYKRQLLNCLHVITLYNRIKR----EPNKFFVPRTVMIGGKAAPGYHMAKMIIRLVTAIGDVVNHDPAVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDV 719          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PYGB_HUMAN (Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5)

HSP 1 Score: 200.675 bits (509), Expect = 7.480e-51
Identity = 98/191 (51.31%), Postives = 133/191 (69.63%), Query Frame = 2
Query:   20 KSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE 592
            K  NK+K  +F++++    ++P +MFD+ VKRIHEYKRQL+N L +V  Y ++K   A      FVPR  + GGKA   Y  AK I+K +T +G  VNHDP +GD LKVIF+ +Y VS+AE +IPA++LSQ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E G EN F+FG R  ++  L ++
Sbjct:  539 KQENKLKFSAFLEKEYKVKINPSSMFDVHVKRIHEYKRQLLNCLHVVTLYNRIKRDPA----KAFVPRTVMIGGKAAPGYHMAKLIIKLVTSIGDVVNHDPVVGDRLKVIFLENYRVSLAEKVIPAADLSQQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGAENLFIFGLRVEDVEALDRK 725          
BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PHSG_CHLMU (Glycogen phosphorylase OS=Chlamydia muridarum GN=glgP PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.480e-51
Identity = 111/255 (43.53%), Postives = 157/255 (61.57%), Query Frame = 2
Query:    5 QFRAAKSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE-RSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYL 766
            ++   K  NK  + + I ++ G SV+P ++FD  +KRIHEYKRQLMNIL ++Y Y +++  S      + VP   IFGGKA   Y  AK I+K I +V   VN+DP+  DLLKV+F P+Y VS+AE +IPA++LS+ ISTAGMEASGT NMKFA+NG + IGT+DGAN+E+ + +G+E+ F+FG    EI+ LR E   +G    + + +E+   V        + D     +  N    + D F V  D  SYL
Sbjct:  516 EWHKIKIQNKEDLSARIYKELGVSVNPQSIFDCHIKRIHEYKRQLMNILRVIYFYNEIRNGST-----EIVPTTVIFGGKAAPGYAMAKLIIKLINNVAHIVNNDPKAKDLLKVVFWPNYRVSLAEAIIPATDLSEQISTAGMEASGTGNMKFALNGALTIGTMDGANIEMAEHIGKEHMFIFGLLEEEISALRNEYYPQGICNANPKIQEILDMVLQARLPEEDKDLFKPIV--NRLLNEGDPFFVLADLESYL 763          
The following BLAST results are available for this feature:
BLAST of CX070170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PYGL_HUMAN6.765e-5252.04Glycogen phosphorylase, liver form OS=Homo sapiens... [more]
PHSG_SYNY36.765e-5245.91Glycogen phosphorylase OS=Synechocystis sp. (strai... [more]
PYGL_MOUSE1.154e-5151.53Glycogen phosphorylase, liver form OS=Mus musculus... [more]
PHSG_HAEIN1.154e-5142.91Glycogen phosphorylase OS=Haemophilus influenzae G... [more]
PYGL_RAT1.507e-5151.02Glycogen phosphorylase, liver form OS=Rattus norve... [more]
PYGM_BOVIN2.571e-5152.13Glycogen phosphorylase, muscle form OS=Bos taurus ... [more]
PYGM_SHEEP5.727e-5151.60Glycogen phosphorylase, muscle form OS=Ovis aries ... [more]
PYGM_HUMAN7.480e-5151.35Glycogen phosphorylase, muscle form OS=Homo sapien... [more]
PYGB_HUMAN7.480e-5151.31Glycogen phosphorylase, brain form OS=Homo sapiens... [more]
PHSG_CHLMU7.480e-5143.53Glycogen phosphorylase OS=Chlamydia muridarum GN=g... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15B11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15B11-D21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070170 ID=CX070170; Name=CX070170; organism=Citrus sinensis; type=EST; length=767bp
ATCTCAGTTTAGGGCGGCAAAAAGTAACAACAAGATGAAGGTTGTGTCTT
TCATCAAAGAAAAAACAGGCTATTCTGTTAGCCCCGATGCAATGTTTGAC
ATCCAGGTGAAGCGCATCCATGAATACAAGCGACAATTGATGAATATCTT
GGGAATTGTTTACCGCTACAAAAAGATGAAAGAAATGAGTGCAGTAGAAA
GGAAGGCCAAGTTTGTACCAAGAGTTTGTATATTTGGAGGAAAAGCATTT
GCTACATATGTGCAAGCCAAGAGAATTGTGAAATTTATTACGGATGTTGG
GGCCACGGTTAATCATGATCCTGAAATAGGTGACTTATTGAAGGTTATTT
TTGTCCCTGATTACAATGTAAGTGTGGCTGAATTGCTTATACCTGCAAGT
GAGCTCTCACAACACATCAGTACTGCCGGGATGGAGGCTAGTGGTACCAG
TAACATGAAATTTGCAATGAATGGTTGCATTTTGATTGGAACCTTGGATG
GTGCCAATGTTGAAATACGGCAAGAGGTTGGAGAGGAGAACTTTTTCCTA
TTTGGTGCCAGAGCCCACGAGATTGCAGGATTGAGAAAAGAAAGATCTGA
GGGGAAATTTGTTCCCGACGCACGTTTTGAAGAAGTGAAGAAATTTGTCA
AATCTGGTGTTTTTGGTTCTTACAACTATGATGAACTAATGGGATCACTG
GAAGGAAATGAAGGTTTTGGCCAGGCAGATTATTTCCTCGTGGGCAAAGA
TTTCCCTAGTTACTTGG
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