CX070170

Overview
NameCX070170
Unique NameCX070170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX070170 vs. ExPASy Swiss-Prot
Match: PHSM_STRPN (Maltodextrin phosphorylase OS=Streptococcus pneumoniae GN=malP PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.940e-40
Identity = 81/193 (41.97%), Postives = 122/193 (63.21%), Query Frame = 2 
Query:    5 QFRAAKSNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGL 583
            +  + K++NK K+   +KE  G  ++P+++FDIQ+KR+HEYKRQ MN L ++++Y  +K  +   R     P    FGGKA   Y  A+ I+  I  +   + +DP +   L+V+ V +YNV+ A  LIPA ++S+ IS A  EASGT NMKF +NG + +GT+DGANVEI + VGEEN ++FG  +  +  L
Sbjct:  457 KLESIKAHNKRKLARHLKEHQGVEINPNSIFDIQIKRLHEYKRQQMNALYVIHKYLDIKAGNIPAR-----PITIFFGGKAAPAYTIAQDIIHLILCMSEVIANDPAVAPHLQVVMVENYNVTAASFLIPACDISEQISLASKEASGTGNMKFMLNGALTLGTMDGANVEIAELVGEENIYIFGEDSETVIDL 644
The following BLAST results are available for this feature:
BLAST of CX070170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PHSM_STRPN5.940e-4041.97Maltodextrin phosphorylase OS=Streptococcus pneumo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15B11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15B11-D21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070170 ID=CX070170; Name=CX070170; organism=Citrus sinensis; type=EST; length=767bp
ATCTCAGTTTAGGGCGGCAAAAAGTAACAACAAGATGAAGGTTGTGTCTT
TCATCAAAGAAAAAACAGGCTATTCTGTTAGCCCCGATGCAATGTTTGAC
ATCCAGGTGAAGCGCATCCATGAATACAAGCGACAATTGATGAATATCTT
GGGAATTGTTTACCGCTACAAAAAGATGAAAGAAATGAGTGCAGTAGAAA
GGAAGGCCAAGTTTGTACCAAGAGTTTGTATATTTGGAGGAAAAGCATTT
GCTACATATGTGCAAGCCAAGAGAATTGTGAAATTTATTACGGATGTTGG
GGCCACGGTTAATCATGATCCTGAAATAGGTGACTTATTGAAGGTTATTT
TTGTCCCTGATTACAATGTAAGTGTGGCTGAATTGCTTATACCTGCAAGT
GAGCTCTCACAACACATCAGTACTGCCGGGATGGAGGCTAGTGGTACCAG
TAACATGAAATTTGCAATGAATGGTTGCATTTTGATTGGAACCTTGGATG
GTGCCAATGTTGAAATACGGCAAGAGGTTGGAGAGGAGAACTTTTTCCTA
TTTGGTGCCAGAGCCCACGAGATTGCAGGATTGAGAAAAGAAAGATCTGA
GGGGAAATTTGTTCCCGACGCACGTTTTGAAGAAGTGAAGAAATTTGTCA
AATCTGGTGTTTTTGGTTCTTACAACTATGATGAACTAATGGGATCACTG
GAAGGAAATGAAGGTTTTGGCCAGGCAGATTATTTCCTCGTGGGCAAAGA
TTTCCCTAGTTACTTGG
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