CX070169

Overview
NameCX070169
Unique NameCX070169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PHSG_SHIFL (Glycogen phosphorylase OS=Shigella flexneri GN=glgP PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.324e-47
Identity = 98/204 (48.04%), Postives = 137/204 (67.16%), Query Frame = -2
Query:  221 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 826
            +DP+IGD LKV+F+P+Y+VS+A+L+IPA++LS+ IS AG EASGTSNMKFA+NG + IGTLDGANVE+   VG +N F+FG  A E+  LR++  +    +  D    +V   + SGVF   +       ++    FG  D++ V  D+ SY++CQ+KVDE Y  Q+ WT  +++N A    FSSDRTI+EYA  IW+I PV L
Sbjct:  614 NDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLDHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRYRDLVDSLINFG--DHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDRTIKEYADHIWHIDPVRL 815          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PHSG_ECOLI (Glycogen phosphorylase OS=Escherichia coli (strain K12) GN=glgP PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.324e-47
Identity = 98/204 (48.04%), Postives = 137/204 (67.16%), Query Frame = -2
Query:  221 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 826
            +DP+IGD LKV+F+P+Y+VS+A+L+IPA++LS+ IS AG EASGTSNMKFA+NG + IGTLDGANVE+   VG +N F+FG  A E+  LR++  +    +  D    +V   + SGVF   +       ++    FG  D++ V  D+ SY++CQ+KVDE Y  Q+ WT  +++N A    FSSDRTI+EYA  IW+I PV L
Sbjct:  614 NDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLDHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRYRDLVDSLINFG--DHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDRTIKEYADHIWHIDPVRL 815          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PHS1_DICDI (Glycogen phosphorylase 1 OS=Dictyostelium discoideum GN=glpV PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.263e-46
Identity = 95/202 (47.03%), Postives = 137/202 (67.82%), Query Frame = -2
Query:  221 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYN-YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 823
            D E+   LKV+F+ +YNVS+A++++PAS+++Q ISTAG EASGTSNMKF MNG ++IGTLDGANVEI +EVG+EN F+FG R  E+   R++ +  +   D R +EV   ++ G FG  + +  ++ SL        +D++L  +DFP YL+ Q  VDE + DQ  W + SI+N+A +  FSSDR + EYA  IW+I P E+
Sbjct:  650 DKEVDQYLKVVFIANYNVSIAQVIVPASDINQQISTAGTEASGTSNMKFTMNGSLIIGTLDGANVEIAEEVGQENMFIFGLRTSEVEAAREKMTNKEVNIDPRLQEVFLNIELGTFGPPDVFRPILDSLI------FSDFYLSIQDFPLYLDSQASVDELWKDQSAWVKKSIINSASTYFFSSDRAMNEYAEQIWDIKPCEV 845          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGL_RAT (Glycogen phosphorylase, liver form OS=Rattus norvegicus GN=Pygl PE=1 SV=5)

HSP 1 Score: 182.956 bits (463), Expect = 1.824e-45
Identity = 99/204 (48.53%), Postives = 134/204 (65.69%), Query Frame = -2
Query:  221 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK--SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 826
            +DP +G  LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K   +A   E+K  +      F S N  +L   +     +   D F V  D+ +Y++CQEKV + Y +QK W  M + N A S KFSSDRTI+EYA+DIWN+ P +L
Sbjct:  633 NDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRVDDVAALDKKGYEAKEYYEA-LPELKLVIDQIDNGFFSPNQPDLFKDIINMLFY--HDRFKVFADYEAYVKCQEKVSQLYMNQKAWNTMVLRNIAASGKFSSDRTIREYAKDIWNMEPSDL 833          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGL_MOUSE (Glycogen phosphorylase, liver form OS=Mus musculus GN=Pygl PE=1 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.824e-45
Identity = 99/204 (48.53%), Postives = 134/204 (65.69%), Query Frame = -2
Query:  221 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK--SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 826
            +DP +G  LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K   +A   E+K  +      F S N  +L   +     +   D F V  D+ +Y++CQEKV + Y +QK W  M + N A S KFSSDRTI+EYA+DIWN+ P +L
Sbjct:  633 NDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRVDDVAALDKKGYEAKEYYEA-LPELKLVIDQIDNGFFSPNQPDLFKDIINMLFY--HDRFKVFADYEAYVKCQEKVSQLYMNQKAWNTMVLKNIAASGKFSSDRTIKEYAKDIWNMEPSDL 833          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGM_MOUSE (Glycogen phosphorylase, muscle form OS=Mus musculus GN=Pygm PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.544e-44
Identity = 96/205 (46.83%), Postives = 133/205 (64.88%), Query Frame = -2
Query:  230 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK---SGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 826
            HDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L +     +   D R  E+++ ++   SG F     D   +++  L  +      D F V  D+  Y++CQ+KV E Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  633 HDPAVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVERLDQRGYNAQEYYD-RIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYIKCQDKVSELYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PHSG_YEAST (Glycogen phosphorylase OS=Saccharomyces cerevisiae GN=GPH1 PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.544e-44
Identity = 96/201 (47.76%), Postives = 131/201 (65.17%), Query Frame = -2
Query:  227 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQK-RWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPV 826
            +D  I  LLKV+FV DYNVS AE++IPAS+LS+HISTAG EASGTSNMKF MNG ++IGT+DGANVEI +E+GE+N FLFG  +  +  LR           +  + V  +++SG F   N +E    ++  +  G  DY+LV  DF SYL   E VD+ + +Q+  W + S+++ A    FSSDR I+EY+  IWN+ PV
Sbjct:  703 NDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGNLSENVEELRYNHQYHPQDLPSSLDSVLSYIESGQFSPENPNEFKPLVDSIKYHG--DYYLVSDDFESYLATHELVDQEFHNQRSEWLKKSVLSLANVGFFSSDRCIEEYSDTIWNVEPV 901          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGM_HUMAN (Glycogen phosphorylase, muscle form OS=Homo sapiens GN=PYGM PE=1 SV=6)

HSP 1 Score: 177.948 bits (450), Expect = 5.867e-44
Identity = 96/205 (46.83%), Postives = 132/205 (64.39%), Query Frame = -2
Query:  230 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK---SGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 826
            HDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L +     +   D R  E+++ ++   SG F     D   +++  L  +      D F V  D+  Y++CQEKV   Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  633 HDPAVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDKLDQRGYNAQEYYD-RIPELRQVIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEDYIKCQEKVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGL_BOVIN (Glycogen phosphorylase, liver form OS=Bos taurus GN=PYGL PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.001e-43
Identity = 96/208 (46.15%), Postives = 135/208 (64.90%), Query Frame = -2
Query:  221 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYN------YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 826
            +DP +G  LK+IF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K   +A   E+K  +     G ++      + +L+  L  +      D F V  D+ +Y++CQEKV + Y + K W  M + N A S KFSSDRTI+EYARDIWN+ P ++
Sbjct:  633 NDPVVGSKLKLIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIEDVAALDKKGYEAKEYYEA-LPELKLAIDQIDKGFFSPKQPDLFKDLVNMLFYH------DRFKVFADYEAYVKCQEKVSQLYMNPKAWNIMVLKNIAASGKFSSDRTIKEYARDIWNMEPSDI 833          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGM_MACFA (Glycogen phosphorylase, muscle form OS=Macaca fascicularis GN=PYGM PE=2 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 1.307e-43
Identity = 95/205 (46.34%), Postives = 132/205 (64.39%), Query Frame = -2
Query:  230 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK---SGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 826
            HDP +GD L+VIF+ +Y VS++E +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L +     +   D R  E+++ ++   SG F     D   +++  L  +      D F V  D+  Y++CQEKV   Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  633 HDPTVGDRLRVIFLENYRVSLSEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDKLDQRGYNAQEYYD-RIPELRQVIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEDYIKCQEKVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830          
The following BLAST results are available for this feature:
BLAST of CX070169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PHSG_SHIFL3.324e-4748.04Glycogen phosphorylase OS=Shigella flexneri GN=glg... [more]
PHSG_ECOLI3.324e-4748.04Glycogen phosphorylase OS=Escherichia coli (strain... [more]
PHS1_DICDI1.263e-4647.03Glycogen phosphorylase 1 OS=Dictyostelium discoide... [more]
PYGL_RAT1.824e-4548.53Glycogen phosphorylase, liver form OS=Rattus norve... [more]
PYGL_MOUSE1.824e-4548.53Glycogen phosphorylase, liver form OS=Mus musculus... [more]
PYGM_MOUSE1.544e-4446.83Glycogen phosphorylase, muscle form OS=Mus musculu... [more]
PHSG_YEAST1.544e-4447.76Glycogen phosphorylase OS=Saccharomyces cerevisiae... [more]
PYGM_HUMAN5.867e-4446.83Glycogen phosphorylase, muscle form OS=Homo sapien... [more]
PYGL_BOVIN1.001e-4346.15Glycogen phosphorylase, liver form OS=Bos taurus G... [more]
PYGM_MACFA1.307e-4346.34Glycogen phosphorylase, muscle form OS=Macaca fasc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15B11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15B11-D21-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070169 ID=CX070169; Name=CX070169; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTGAAACAAGATTTTCAGTTCTTATTTATTTTATTCTATTAACTAC
GTAATACAGTAATTATATTCATCGAAGATACATTTATTCACGGCTTTCAT
CCAGGGATCATAAGCATTTTGCTTTACATAGAACATATATCAACAGGATG
CCATAAGTGATCAGAAAAGCCTGTGGTAGTCCCAACTCAAGTACTAGGAA
CAAGCATTACACAGTCACGGCAATTCGACGGGTATTATGTTCCATATGTC
TCGGGCATATTCCTGAATCGTTCTGTCGCTGCTGAACTTGGATGAACCCG
CTGTGTTCATGATCGACATTCTCGTCCATCTCTTTTGATCGCAATATGCT
TCATCAACCTTCTCTTGGCATTCCAAGTAACTAGGGAAATCTTTGCCCAC
GAGGAAATAATCTGCCTGGCCAAAACCTTCATTTCCTTCCAGTGATCCCA
TTAGTTCATCATAGTTGTAAGAACCAAAAACACCAGATTTGACAAATTTC
TTCACTTCTTCAAAACGTGCGTCGGGAACAAATTTCCCCTCAGATCTTTC
TTTTCTCAATCCTGCAATCTCGTGGGCTCTGGCACCAAATAGGAAAAAGT
TCTCCTCTCCAACCTCTTGCCGTATTTCAACATTGGCACCATCCAAGGTT
CCAATCAAAATGCAACCATTCATTGCAAATTTCATGTTACTGGTACCACT
AGCCTCCATCCCGGCAGTACTGATGTGTTGTGAGAGCTCACTTGCAGGTA
TAAGCAATTCAGCCACACTTACATTGTAATCAGGGACAAAAATAACCTTC
AATAAGTCACCTATTTCAGGATCATGA
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