CX070169

Overview
NameCX070169
Unique NameCX070169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGL_SHEEP (Glycogen phosphorylase, liver form OS=Ovis aries GN=PYGL PE=2 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 1.307e-43
Identity = 96/208 (46.15%), Postives = 134/208 (64.42%), Query Frame = -2
Query:  221 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYN------YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 826
            +DP +G  LK+IF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF  NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K   +A   E+K  +     G ++      + +L+  L  +      D F V  D+ +Y++CQEKV + Y + K W  M + N A S KFSSDRTI+EYARDIWN+ P ++
Sbjct:  633 NDPMVGSKLKLIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMQNGALTIGTMDGANVEMAEEAGEENLFIFGMRVEDVAALDKKGYEAKEYYEA-LPELKLAIDQIDKGFFSPKQPDLFKDLVNMLFYH------DRFKVFADYEAYVKCQEKVSQLYMNPKAWNIMVLKNIAASGKFSSDRTIKEYARDIWNMEPSDI 833          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGB_HUMAN (Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5)

HSP 1 Score: 176.792 bits (447), Expect = 1.307e-43
Identity = 97/208 (46.63%), Postives = 132/208 (63.46%), Query Frame = -2
Query:  221 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFV---KSGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 826
            HDP +GD LKVIF+ +Y VS+AE +IPA++LSQ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E G EN F+FG R  ++  L ++    +   D    E+K+ V    SG F     D   +++  L  +      D F V  D+ +Y++CQ +VD+ Y + K WT+  I N A S KFSSDRTI EYAR+IW + P +L
Sbjct:  633 HDPVVGDRLKVIFLENYRVSLAEKVIPAADLSQQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGAENLFIFGLRVEDVEALDRKGYNAREYYD-HLPELKQAVDQISSGFFSPKEPDCFKDIVNMLMHH------DRFKVFADYEAYMQCQAQVDQLYRNPKEWTKKVIRNIACSGKFSSDRTITEYAREIWGVEPSDL 833          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGM_RABIT (Glycogen phosphorylase, muscle form OS=Oryctolagus cuniculus GN=PYGM PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.707e-43
Identity = 95/205 (46.34%), Postives = 132/205 (64.39%), Query Frame = -2
Query:  230 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK---SGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 826
            HDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L +     +   D R  E+++ ++   SG F     D   +++  L  +      D F V  D+  Y++CQE+V   Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  633 HDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYD-RIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYVKCQERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGL_HUMAN (Glycogen phosphorylase, liver form OS=Homo sapiens GN=PYGL PE=1 SV=4)

HSP 1 Score: 176.407 bits (446), Expect = 1.707e-43
Identity = 96/204 (47.06%), Postives = 132/204 (64.71%), Query Frame = -2
Query:  221 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDA--RFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 826
            +DP +G  LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K   +A    + V   + +G F     D     +  N  F   D F V  D+ +Y++CQ+KV + Y + K W  M + N A S KFSSDRTI+EYA++IWN+ P +L
Sbjct:  633 NDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDII--NMLF-YHDRFKVFADYEAYVKCQDKVSQLYMNPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDL 833          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGM_SHEEP (Glycogen phosphorylase, muscle form OS=Ovis aries GN=PYGM PE=2 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 2.229e-43
Identity = 95/205 (46.34%), Postives = 131/205 (63.90%), Query Frame = -2
Query:  230 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFV---KSGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 826
            HDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L ++    +   D R  E++  +    SG F     D   +++  L  +      D F V  D+  Y++CQE+V   Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  633 HDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVERLDQKGYNAQEYYD-RIPELRHIIDQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYVKCQERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGM_RAT (Glycogen phosphorylase, muscle form OS=Rattus norvegicus GN=Pygm PE=2 SV=5)

HSP 1 Score: 176.022 bits (445), Expect = 2.229e-43
Identity = 93/201 (46.27%), Postives = 129/201 (64.18%), Query Frame = -2
Query:  230 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK--SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 826
            HDP +GD  +VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GE+NFF+FG R  ++  L +     +   D R  E+++ ++  S  F S    +L   +         D F V  D+  Y++CQ+KV E Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  633 HDPAVGDRFRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEDNFFIFGMRVEDVERLDQRGYNAQEYYD-RIPELRQIIEQLSSGFFSPKQPDLFKDIVNM--VMHHDRFKVFADYEEYIKCQDKVSELYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGLEP 830          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGM_BOVIN (Glycogen phosphorylase, muscle form OS=Bos taurus GN=PYGM PE=1 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 2.229e-43
Identity = 95/205 (46.34%), Postives = 131/205 (63.90%), Query Frame = -2
Query:  230 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFV---KSGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 826
            HDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L ++    +   D R  E++  +    SG F     D   +++  L  +      D F V  D+  Y++CQE+V   Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  633 HDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVERLDQKGYNAQEYYD-RIPELRHVIDQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYIKCQERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGB_MOUSE (Glycogen phosphorylase, brain form OS=Mus musculus GN=Pygb PE=1 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 2.229e-43
Identity = 96/209 (45.93%), Postives = 134/209 (64.11%), Query Frame = -2
Query:  221 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE----RSEGKFVPDARFEEVKKFVKSGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 826
            HDP +GD L+VIF+ +Y VS+AE +IPA++LSQ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++  L ++    R   + +P+ R  +    + SG F   + D   +++  L  +      D F V  D+ +Y++CQ +VD  Y + K WT+  I N A S KFSSDRTI EYAR+IW + P +L
Sbjct:  633 HDPVVGDRLRVIFLENYRVSLAEKVIPAADLSQQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRVEDVEALDQKGYNAREFYERLPELR--QAVDQISSGFFSPKDPDCFKDVVNMLMYH------DRFKVFADYEAYIQCQAQVDRLYRNSKEWTKKVIRNIACSGKFSSDRTITEYAREIWGVEPSDL 833          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGB_PONAB (Glycogen phosphorylase, brain form OS=Pongo abelii GN=PYGB PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 3.803e-43
Identity = 93/202 (46.04%), Postives = 128/202 (63.37%), Query Frame = -2
Query:  221 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 826
            HDP +GD LKVIF+ +Y VS+AE +IPA++LSQ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E G EN F+FG +  ++  L ++    +   D    E+K+ V     G ++  E     +        D F V  D+ +Y++CQ +VD+ Y + K WT+  I N A S KFSSDRTI EYAR+IW + P +L
Sbjct:  633 HDPVVGDRLKVIFLENYRVSLAEKVIPAADLSQQISTAGAEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGAENLFIFGLQVEDVEALDRKGYNAREYYD-HLPELKQAVDQISSGFFSPKEPNCFKDIVNMLMHHDRFKVFADYEAYMQCQAQVDQLYRNPKEWTKKVIRNIACSGKFSSDRTITEYAREIWGVEPSDL 833          
BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PYGB_RAT (Glycogen phosphorylase, brain form (Fragment) OS=Rattus norvegicus GN=Pygb PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 6.487e-43
Identity = 97/209 (46.41%), Postives = 135/209 (64.59%), Query Frame = -2
Query:  221 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGL-RKERSEGKF---VPDARFEEVKKFVKSGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 826
            HDP +GD L+VIF+ +Y VS+AE +IPA++LSQ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++  L +K  +  +F   +P+ R  +    + SG F   + D   +++  L  +      D F V  D+ +Y++CQ +VD  Y + K WT+  I N A S KFSSDRTI EYAR+IW + P +L
Sbjct:  633 HDPVVGDRLRVIFLENYRVSLAEKVIPAADLSQQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRVEDVEALDQKGYNAQEFYERLPELR--QAVDQISSGFFSPKDPDCFKDVVNMLMYH------DRFKVFADYEAYIQCQAQVDHLYRNPKDWTKKVIRNIACSGKFSSDRTITEYAREIWGVEPSDL 833          
The following BLAST results are available for this feature:
BLAST of CX070169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PYGL_SHEEP1.307e-4346.15Glycogen phosphorylase, liver form OS=Ovis aries G... [more]
PYGB_HUMAN1.307e-4346.63Glycogen phosphorylase, brain form OS=Homo sapiens... [more]
PYGM_RABIT1.707e-4346.34Glycogen phosphorylase, muscle form OS=Oryctolagus... [more]
PYGL_HUMAN1.707e-4347.06Glycogen phosphorylase, liver form OS=Homo sapiens... [more]
PYGM_SHEEP2.229e-4346.34Glycogen phosphorylase, muscle form OS=Ovis aries ... [more]
PYGM_RAT2.229e-4346.27Glycogen phosphorylase, muscle form OS=Rattus norv... [more]
PYGM_BOVIN2.229e-4346.34Glycogen phosphorylase, muscle form OS=Bos taurus ... [more]
PYGB_MOUSE2.229e-4345.93Glycogen phosphorylase, brain form OS=Mus musculus... [more]
PYGB_PONAB3.803e-4346.04Glycogen phosphorylase, brain form OS=Pongo abelii... [more]
PYGB_RAT6.487e-4346.41Glycogen phosphorylase, brain form (Fragment) OS=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15B11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15B11-D21-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070169 ID=CX070169; Name=CX070169; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTGAAACAAGATTTTCAGTTCTTATTTATTTTATTCTATTAACTAC
GTAATACAGTAATTATATTCATCGAAGATACATTTATTCACGGCTTTCAT
CCAGGGATCATAAGCATTTTGCTTTACATAGAACATATATCAACAGGATG
CCATAAGTGATCAGAAAAGCCTGTGGTAGTCCCAACTCAAGTACTAGGAA
CAAGCATTACACAGTCACGGCAATTCGACGGGTATTATGTTCCATATGTC
TCGGGCATATTCCTGAATCGTTCTGTCGCTGCTGAACTTGGATGAACCCG
CTGTGTTCATGATCGACATTCTCGTCCATCTCTTTTGATCGCAATATGCT
TCATCAACCTTCTCTTGGCATTCCAAGTAACTAGGGAAATCTTTGCCCAC
GAGGAAATAATCTGCCTGGCCAAAACCTTCATTTCCTTCCAGTGATCCCA
TTAGTTCATCATAGTTGTAAGAACCAAAAACACCAGATTTGACAAATTTC
TTCACTTCTTCAAAACGTGCGTCGGGAACAAATTTCCCCTCAGATCTTTC
TTTTCTCAATCCTGCAATCTCGTGGGCTCTGGCACCAAATAGGAAAAAGT
TCTCCTCTCCAACCTCTTGCCGTATTTCAACATTGGCACCATCCAAGGTT
CCAATCAAAATGCAACCATTCATTGCAAATTTCATGTTACTGGTACCACT
AGCCTCCATCCCGGCAGTACTGATGTGTTGTGAGAGCTCACTTGCAGGTA
TAAGCAATTCAGCCACACTTACATTGTAATCAGGGACAAAAATAACCTTC
AATAAGTCACCTATTTCAGGATCATGA
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