CX070169

Overview
NameCX070169
Unique NameCX070169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX070169 vs. ExPASy Swiss-Prot
Match: PHSM_STRPN (Maltodextrin phosphorylase OS=Streptococcus pneumoniae GN=malP PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.393e-29
Identity = 75/200 (37.50%), Postives = 114/200 (57.00%), Query Frame = -2 
Query:  236 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE---RSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 826
            +DP +   L+V+ V +YNV+ A  LIPA ++S+ IS A  EASGT NMKF +NG + +GT+DGANVEI + VGEEN ++FG  +  +  L  +   +S   +  +A    V   V   V  + N + L      NE   + D+F+   D   Y++ +E++   Y D+  W    I+N + +  FSSDRTI +Y  DIW++
Sbjct:  555 NDPAVAPHLQVVMVENYNVTAASFLIPACDISEQISLASKEASGTGNMKFMLNGALTLGTMDGANVEIAELVGEENIYIFGEDSETVIDLYAKAAYKSSEFYAREAIKPLVDFIVSDAVLAAGNKERLERFY--NELINK-DWFMTLLDLEDYIKVKEQMLADYEDRDAWLDKVIVNISKAGFFSSDRTIAQYNEDIWHL 751
The following BLAST results are available for this feature:
BLAST of CX070169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PHSM_STRPN2.393e-2937.50Maltodextrin phosphorylase OS=Streptococcus pneumo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15B11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15B11-D21-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070169 ID=CX070169; Name=CX070169; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTGAAACAAGATTTTCAGTTCTTATTTATTTTATTCTATTAACTAC
GTAATACAGTAATTATATTCATCGAAGATACATTTATTCACGGCTTTCAT
CCAGGGATCATAAGCATTTTGCTTTACATAGAACATATATCAACAGGATG
CCATAAGTGATCAGAAAAGCCTGTGGTAGTCCCAACTCAAGTACTAGGAA
CAAGCATTACACAGTCACGGCAATTCGACGGGTATTATGTTCCATATGTC
TCGGGCATATTCCTGAATCGTTCTGTCGCTGCTGAACTTGGATGAACCCG
CTGTGTTCATGATCGACATTCTCGTCCATCTCTTTTGATCGCAATATGCT
TCATCAACCTTCTCTTGGCATTCCAAGTAACTAGGGAAATCTTTGCCCAC
GAGGAAATAATCTGCCTGGCCAAAACCTTCATTTCCTTCCAGTGATCCCA
TTAGTTCATCATAGTTGTAAGAACCAAAAACACCAGATTTGACAAATTTC
TTCACTTCTTCAAAACGTGCGTCGGGAACAAATTTCCCCTCAGATCTTTC
TTTTCTCAATCCTGCAATCTCGTGGGCTCTGGCACCAAATAGGAAAAAGT
TCTCCTCTCCAACCTCTTGCCGTATTTCAACATTGGCACCATCCAAGGTT
CCAATCAAAATGCAACCATTCATTGCAAATTTCATGTTACTGGTACCACT
AGCCTCCATCCCGGCAGTACTGATGTGTTGTGAGAGCTCACTTGCAGGTA
TAAGCAATTCAGCCACACTTACATTGTAATCAGGGACAAAAATAACCTTC
AATAAGTCACCTATTTCAGGATCATGA
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