CX070166

Overview
NameCX070166
Unique NameCX070166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070166 vs. ExPASy Swiss-Prot
Match: GLNB_ECOL6 (Nitrogen regulatory protein P-II 1 OS=Escherichia coli O6 GN=glnB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 54/110 (49.09%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  204 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 533
            K++AI++P+++  V  AL  +GI G+TV++V+GFG Q G TE + G+E+  D F+ KVK+EIVV  D V+  +D I+  A+TG+IGDGKIF+  V+ VIR+RTGE  + A
Sbjct:    3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111          
BLAST of CX070166 vs. ExPASy Swiss-Prot
Match: GLNB_ECO57 (Nitrogen regulatory protein P-II 1 OS=Escherichia coli O157:H7 GN=glnB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 54/110 (49.09%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  204 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 533
            K++AI++P+++  V  AL  +GI G+TV++V+GFG Q G TE + G+E+  D F+ KVK+EIVV  D V+  +D I+  A+TG+IGDGKIF+  V+ VIR+RTGE  + A
Sbjct:    3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111          
BLAST of CX070166 vs. ExPASy Swiss-Prot
Match: GLNB_RHORT (Nitrogen regulatory protein P-II OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 51/110 (46.36%), Postives = 79/110 (71.82%), Query Frame = 3
Query:  204 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 533
            K+EAI++P+++ +V  AL  +G++G+TV++ +GFG Q G TE + G+E+  D F+ KVK+E+V+    VE  I+ I + A+TG IGDGKIF+  + + IR+RTGERG  A
Sbjct:    3 KIEAIIKPFKLDEVKEALHEIGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKIELVIEDALVERAIEAIQQAAQTGRIGDGKIFVYAIEEAIRIRTGERGGDA 111          
BLAST of CX070166 vs. ExPASy Swiss-Prot
Match: GLNB_MYCTU (Nitrogen regulatory protein P-II OS=Mycobacterium tuberculosis GN=glnB PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 51/109 (46.79%), Postives = 80/109 (73.39%), Query Frame = 3
Query:  207 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 533
            + AI++P+ +  V ++L + G+ G+TVS+++G+G Q G TE + G+E+S D FV KV++E+VV    V+ V+D I+  ARTG+IGDGK+++ PV  ++RVRTGERG  A
Sbjct:    4 ITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVD-FVPKVRIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDA 111          
BLAST of CX070166 vs. ExPASy Swiss-Prot
Match: GLNB_MYCBO (Nitrogen regulatory protein P-II OS=Mycobacterium bovis GN=glnB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 51/109 (46.79%), Postives = 80/109 (73.39%), Query Frame = 3
Query:  207 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 533
            + AI++P+ +  V ++L + G+ G+TVS+++G+G Q G TE + G+E+S D FV KV++E+VV    V+ V+D I+  ARTG+IGDGK+++ PV  ++RVRTGERG  A
Sbjct:    4 ITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVD-FVPKVRIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDA 111          
BLAST of CX070166 vs. ExPASy Swiss-Prot
Match: GLNB_BRAJA (Nitrogen regulatory protein P-II OS=Bradyrhizobium japonicum GN=glnB PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.334e-22
Identity = 51/107 (47.66%), Postives = 76/107 (71.03%), Query Frame = 3
Query:  204 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 524
            K+EAI++P+++ +V  AL  +G++G+TV++ +GFG Q G  E + G+E+  D F+ KVK+EIV+  D VE  ID I   A+TG IGDGKIF+  + + IR+RTGE G
Sbjct:    3 KIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVD-FLPKVKIEIVIGDDLVERAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESG 108          
BLAST of CX070166 vs. ExPASy Swiss-Prot
Match: GLNB_HAEIN (Nitrogen regulatory protein P-II OS=Haemophilus influenzae GN=glnB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 52/110 (47.27%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  204 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 533
            K+EA+++P+++  V  +L ++GI G+T+++VRGFG Q G TE + G+E+  D F+ KVK+E+VV  + V+  I+ I+E A+TG+IGDGKIF+  V   IR+RTGE  E A
Sbjct:    3 KIEAMIKPFKLDDVRESLSDIGISGMTITEVRGFGRQKGHTELYRGAEYMVD-FLPKVKLEVVVPDELVDQCIEAIIETAQTGKIGDGKIFVYHVERAIRIRTGEENEDA 111          
BLAST of CX070166 vs. ExPASy Swiss-Prot
Match: GLNB_RHOCA (Nitrogen regulatory protein P-II OS=Rhodobacter capsulatus GN=glnB PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.287e-21
Identity = 52/110 (47.27%), Postives = 78/110 (70.91%), Query Frame = 3
Query:  204 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 533
            KVEAI++P+++ +V  AL   GI+G++V +V+GFG Q G TE + G+E+  D F+ KVK+E+V+  + V+  I+ I+  ART +IGDGKIF+  +   IR+RTGE GE A
Sbjct:    3 KVEAIIKPFKLDEVKEALQEAGIQGLSVIEVKGFGRQKGHTELYRGAEYVVD-FLPKVKIEMVLPDEMVDIAIEAIVGAARTEKIGDGKIFVSSIEQAIRIRTGETGEDA 111          
BLAST of CX070166 vs. ExPASy Swiss-Prot
Match: GLNK_SHIFL (Nitrogen regulatory protein P-II 2 OS=Shigella flexneri GN=glnK PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.293e-21
Identity = 49/109 (44.95%), Postives = 80/109 (73.39%), Query Frame = 3
Query:  207 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 533
            V  I++P++++ V  AL ++GI+G+TV++V+GFG Q G  E + G+E+S + F+ KVK+++ ++ DQ++ VID + + A TG+IGDGKIF+  +  VIR+RTGE  E A
Sbjct:    4 VTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111          
BLAST of CX070166 vs. ExPASy Swiss-Prot
Match: GLNK_ECOLI (Nitrogen regulatory protein P-II 2 OS=Escherichia coli (strain K12) GN=glnK PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.293e-21
Identity = 49/109 (44.95%), Postives = 80/109 (73.39%), Query Frame = 3
Query:  207 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 533
            V  I++P++++ V  AL ++GI+G+TV++V+GFG Q G  E + G+E+S + F+ KVK+++ ++ DQ++ VID + + A TG+IGDGKIF+  +  VIR+RTGE  E A
Sbjct:    4 VTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111          
The following BLAST results are available for this feature:
BLAST of CX070166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GLNB_ECOL65.990e-2349.09Nitrogen regulatory protein P-II 1 OS=Escherichia ... [more]
GLNB_ECO575.990e-2349.09Nitrogen regulatory protein P-II 1 OS=Escherichia ... [more]
GLNB_RHORT7.823e-2346.36Nitrogen regulatory protein P-II OS=Rhodospirillum... [more]
GLNB_MYCTU1.022e-2246.79Nitrogen regulatory protein P-II OS=Mycobacterium ... [more]
GLNB_MYCBO1.022e-2246.79Nitrogen regulatory protein P-II OS=Mycobacterium ... [more]
GLNB_BRAJA1.334e-2247.66Nitrogen regulatory protein P-II OS=Bradyrhizobium... [more]
GLNB_HAEIN1.743e-2247.27Nitrogen regulatory protein P-II OS=Haemophilus in... [more]
GLNB_RHOCA3.287e-2147.27Nitrogen regulatory protein P-II OS=Rhodobacter ca... [more]
GLNK_SHIFL4.293e-2144.95Nitrogen regulatory protein P-II 2 OS=Shigella fle... [more]
GLNK_ECOLI4.293e-2144.95Nitrogen regulatory protein P-II 2 OS=Escherichia ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15B09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15B09-D17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070166 ID=CX070166; Name=CX070166; organism=Citrus sinensis; type=EST; length=728bp
CTGCAATTGCAAACCCAGCCTCGTTTACTCCGCTCAACTTCTCTTCTCAT
CTCAAAGAACTTCCTCTTGTAAATTTCGGCTCCGTGCGGCCAAGTTTGAG
AATTTCTCGACTTTCTAGGCTCAAATGCACAAGAAATGTATCAAATCTTC
ATGTTATCAGAGCCCAGAGCTCACCTGATTATATTCCTGATTCTAAGTTT
TACAAAGTGGAAGCCATTCTCAGGCCCTGGAGAGTCCAGCAGGTTTCTTC
GGCTTTGCTGAATATGGGTATCCGTGGTGTCACGGTTTCTGATGTTCGAG
GTTTTGGTGCTCAAGGTGGCTCAACAGAAAGGCATGGTGGCTCTGAATTT
TCTGAGGATAAATTTGTTGCTAAAGTGAAGATGGAGATTGTGGTGAGCAA
AGACCAGGTGGAAGGAGTAATTGATAAAATTATGGAGGAGGCAAGGACTG
GAGAAATTGGTGACGGCAAGATTTTTTTGGTACCTGTCTCAGATGTCATA
AGAGTTCGAACTGGTGAACGAGGTGAAAAAGCTGAAAGGATGGCAGGAGG
ATGGTCGGACATATCTTCAGCTGTGTGACCTTGTACTGATTTGTCGTATG
ATTTGAAAGCAAGATTAACATCAAAACCTCTTAGGTTTTAGAAGTTTATG
TTGCAATTATTCTGTACCGCATGTGCTTGATAAAAAAACAAGAATAAAAA
ACTGGCATTGGTCTTCCATCTAAAAAAA
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