CX070143

Overview
NameCX070143
Unique NameCX070143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070143_ssr611 microsatellite CX070143_ssr611:611..622. BLAST: Citrus ESTs to Prunus persica proteins V1
CX070143_ssr684 microsatellite CX070143_ssr684:684..695. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11695 contig Csv1_Contig11695:561..1316. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: DWRF8_MAIZE (DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.489e-19
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = -1
Query:    1 EQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMG---------TAQEDGISHLATDTVHYNPSDVSGWVQSM 201
            EQ+   +DELL  LGYKVRSS+MADVAQKLEQLEM MG         TA +  +SHLATDTVHYNPSD+S WV+SM
Sbjct:   31 EQEEEDVDELLAALGYKVRSSDMADVAQKLEQLEMAMGMGGVGGAGATADDGFVSHLATDTVHYNPSDLSSWVESM 106          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.658e-19
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = -1
Query:    1 EEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGT-------AQEDG-ISHLATDTVHYNPSDVSGWVQSM 204
            EE+D   +DELL  LGYKVRSS+MADVAQKLEQLEM MG        A +DG +SHLATDTVHYNPSD+S WV+SM
Sbjct:   34 EEED---VDELLAALGYKVRSSDMADVAQKLEQLEMAMGMGGVSAPGAADDGFVSHLATDTVHYNPSDLSSWVESM 106          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: SLN1_HORVU (DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.067e-17
Identity = 49/83 (59.04%), Postives = 61/83 (73.49%), Query Frame = -1
Query:    1 ANKAKMWEEEQDTGG---MDELLEVLGYKVRSSEMADVAQKLEQLEMVM---GTAQEDGI-SHLATDTVHYNPSDVSGWVQSM 228
            +++ KM     + G    +DELL  LGYKVR+S+MADVAQKLEQLEM M   G A +DG  +HLATDTVHYNP+D+S WV+SM
Sbjct:   20 SSRDKMMVSSSEAGEGEEVDELLAALGYKVRASDMADVAQKLEQLEMAMGMGGPAPDDGFATHLATDTVHYNPTDLSSWVESM 102          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.541e-16
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = -1
Query:    1 MDELLEVLGYKVRSSEMADVAQKLEQLEMVM-------GTAQEDGI-SHLATDTVHYNPSDVSGWVQSM 183
            +DELL  LGYKVR+S+MADVAQKLEQLEM M       G A +D   +HLATDTVHYNP+D+S WV+SM
Sbjct:   37 VDELLAALGYKVRASDMADVAQKLEQLEMAMGMGGVGAGAAPDDSFATHLATDTVHYNPTDLSSWVESM 105          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.483e-16
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = -1
Query:    1 ANKAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSM 228
            A+K K  ++  ++   DELL VLGYKVRSSEMA+VAQKLEQLEMV+  + +D  S +  D+VHYNPSD+S WV+SM
Sbjct:   28 ADKKKADDDNNNSNMDDELLAVLGYKVRSSEMAEVAQKLEQLEMVL--SNDDVGSTVLNDSVHYNPSDLSNWVESM 101          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: RGL3_ARATH (DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.703e-15
Identity = 43/61 (70.49%), Postives = 47/61 (77.05%), Query Frame = -1
Query:    1 MDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSM 183
            MDE L VLGYKVRSS+MADVAQKLEQLEMV+        S+   DTVHYNPSD+SGW QSM
Sbjct:   33 MDEFLAVLGYKVRSSDMADVAQKLEQLEMVLSNDIASS-SNAFNDTVHYNPSDLSGWAQSM 92          
The following BLAST results are available for this feature:
BLAST of CX070143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DWRF8_MAIZE1.489e-1965.79DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1[more]
SLR1_ORYSJ5.658e-1968.42DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]
SLN1_HORVU1.067e-1759.04DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1... [more]
RHT1_WHEAT1.541e-1665.22DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 P... [more]
RGL2_ARATH4.483e-1659.21DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
RGL3_ARATH1.703e-1570.49DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15A06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15A06-B11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070143 ID=CX070143; Name=CX070143; organism=Citrus sinensis; type=EST; length=756bp
CATGCTCTGAACCCAGCCCGAAACATCAGATGGGTTGTAGTGAACAGTGT
CAGTGGCAAGATGGGAAATTCCGTCTTCTTGAGCAGTGCCCATCACCATC
TCCAGCTGTTCAAGCTTCTGAGCAACATCAGCCATCTCTGAAGATCGTAC
TTTGTAACCCAAAACTTCCAATAACTCGTCCATGCCGCCAGTGTCTTGCT
CTTCCTCCCACATCTTTGCCTTATTTGCATTTCCCGTTGACGACGAATAA
TCGCCTTTTCCACTTCCACTACCGCCACCGTAACTATGTTGGTGATCTCT
CTTCATGATGATGAGATTTTTCCTTTTTTTTTCTTCTCTTCTTTTTGTTG
AGGGTTCTCTTTTGTTGGGTTCTTTGATTCTGAAAGAAAAAGAAGAGGAG
TAGAGGAAAGATACTAGAATTTGGCCACGAGAGGGAAGTGGGGGCTTATA
TTGGAGAAAATTTTTGCATTTTTTGAAAAGATTTTTAGGAGGAAATGATG
AAAGAAAAGGAATGTTATGGGTGGGAGGTCCAATGAAGCAACAGGGAGGG
TTGCGAGTGGAAGAGATAAGGAACAACGAAGGCCATAATAATGGGACTTT
ATTTTATTTGTATTATTATTATTTTTAAAAATTTGTTTTTGGGTTATGAA
GTTACGTTAATATATTTTAAATTTTTTTTTTTGTAAATAAATAAAGAAAA
GGTGGTTTGTGAAAATTAGCTCCGGCAAGCATTTAAAAGCATCATCAAAA
GAGCCG
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