CX070119

Overview
NameCX070119
Unique NameCX070119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_STAPU (Photosystem II reaction center protein I OS=Staurastrum punctulatum GN=psbI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLKLFVYTVVIFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPTRNPGRKE 36          
BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_ANTFO (Photosystem II reaction center protein I OS=Anthoceros formosae GN=psbI PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLKLFVYTVVIFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPKRNPGRKE 36          
BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_ADICA (Photosystem II reaction center protein I OS=Adiantum capillus-veneris GN=psbI PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLKLFVY VVIFFVSLF+FGFLSNDPGRNPGR++
Sbjct:    1 MLTLKLFVYAVVIFFVSLFVFGFLSNDPGRNPGRKD 36          
BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_WELMI (Photosystem II reaction center protein I OS=Welwitschia mirabilis GN=psbI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.583e-11
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLK+FVYTVV FF+SLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKVFVYTVVTFFISLFLFGFLSNDPGRNPGRKE 36          
BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_OEDCA (Photosystem II reaction center protein I OS=Oedogonium cardiacum GN=psbI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.067e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = -1
Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLK+FVYTVV FFVSLF+FGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKIFVYTVVTFFVSLFVFGFLSNDPGRNPGKRE 36          
BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_CHLVU (Photosystem II reaction center protein I OS=Chlorella vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.067e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = -1
Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPGQRE 36          
BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_NEPOL (Photosystem II reaction center protein I OS=Nephroselmis olivacea GN=psbI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.015e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = -1
Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG ++
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPGTKD 36          
The following BLAST results are available for this feature:
BLAST of CX070119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
PSBI_STAPU9.280e-1291.67Photosystem II reaction center protein I OS=Staura... [more]
PSBI_ANTFO9.280e-1291.67Photosystem II reaction center protein I OS=Anthoc... [more]
PSBI_ADICA9.280e-1288.89Photosystem II reaction center protein I OS=Adiant... [more]
PSBI_WELMI1.583e-1186.11Photosystem II reaction center protein I OS=Welwit... [more]
PSBI_OEDCA2.067e-1186.11Photosystem II reaction center protein I OS=Oedogo... [more]
PSBI_CHLVU2.067e-1188.89Photosystem II reaction center protein I OS=Chlore... [more]
PSBI_NEPOL6.015e-1186.11Photosystem II reaction center protein I OS=Nephro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14H04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14H04-O8-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070119 ID=CX070119; Name=CX070119; organism=Citrus sinensis; type=EST; length=786bp
CGGGCTTTTTCAAGCATTATTTTTTGTGTAATGTAACATAGTCATTTTTT
TTTTTTTTTATTTTCAATTAGGAGAGATGGCTGAGTGGATTAAAGCGTCG
GATTGCTAATCCGGTGTACGAGTTCTTCGTACCGAGGGTTCGAATCCCTC
TCTTTCCGTTTCGGGCGATGGCTTGGTATTTTTCAAATTTAACTTTAGCG
AACACTTTTACTTTATTTTTAATAGTAACTGGGAATCAAAAAATCCTAAG
AACGTTTATACGAATAAAGTAAGCAACTCCTTCCTTTTTTATTCTTCGCG
TCCGGGATTACGCCCTGGATCATTAGACAGGAATCCGAAGATGAAGAGCG
AAACAAAGAATATCACTACGGTGTAAACAAAGAGTTTGAGAGTAAGCATT
ACACAATCTCCAAATCAGGTTTTTGGGGAAAAGGAAAAAGAGAATAGATT
CTCTATTTTTATACTACATATCCAATTTTGACATCAAGAAATGAAGTTCT
TTTTAGAATTTGATTCTCTAAATAGAAAATCGTTTTCATAAATTAAATTC
ACACAATTAGAATTCTACATTTTGGTTGGCTCTAATATAAGATGGTTTCA
GTGAAAAAGGGTCAAAATTGCAAATAGCAAATGGGGGATCAAAATGGATC
GCGGTTCCCCAAGAATTTCATTGTTTGAATGTTTGAATTGAGGCGGGGGT
TCGTTCATATTGTAAGACTCATCTGCTCTTATTTATTAATTGTTAGAATT
TTTTTTTTTTCGAACTAGAATAAATCATGAATTTTT
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