CX070119 | Citrus Genome Database

Overview


Name	CX070119
Unique Name	CX070119
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_CARPA (Photosystem II reaction center protein I OS=Carica papaya GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_CAPBU (Photosystem II reaction center protein I OS=Capsella bursa-pastoris GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_CALFG (Photosystem II reaction center protein I OS=Calycanthus floridus var. glaucus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_BUXMI (Photosystem II reaction center protein I OS=Buxus microphylla GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_BRADI (Photosystem II reaction center protein I OS=Brachypodium distachyon GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_BARVE (Photosystem II reaction center protein I OS=Barbarea verna GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_ATRBE (Photosystem II reaction center protein I OS=Atropa belladonna GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_ARATH (Photosystem II reaction center protein I OS=Arabidopsis thaliana GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_ARAHI (Photosystem II reaction center protein I OS=Arabis hirsuta GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX070119 vs. ExPASy Swiss-Prot
Match: PSBI_AGRST (Photosystem II reaction center protein I OS=Agrostis stolonifera GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  292 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 399
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CX070119 vs. ExPASy Swiss-Prot

BLAST of CX070119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107


Match Name	E-value	Identity	Description
PSBI_CARPA	2.885e-13	100.00	Photosystem II reaction center protein I OS=Carica...	[more]
PSBI_CAPBU	2.885e-13	100.00	Photosystem II reaction center protein I OS=Capsel...	[more]
PSBI_CALFG	2.885e-13	100.00	Photosystem II reaction center protein I OS=Calyca...	[more]
PSBI_BUXMI	2.885e-13	100.00	Photosystem II reaction center protein I OS=Buxus ...	[more]
PSBI_BRADI	2.885e-13	100.00	Photosystem II reaction center protein I OS=Brachy...	[more]
PSBI_BARVE	2.885e-13	100.00	Photosystem II reaction center protein I OS=Barbar...	[more]
PSBI_ATRBE	2.885e-13	100.00	Photosystem II reaction center protein I OS=Atropa...	[more]
PSBI_ARATH	2.885e-13	100.00	Photosystem II reaction center protein I OS=Arabid...	[more]
PSBI_ARAHI	2.885e-13	100.00	Photosystem II reaction center protein I OS=Arabis...	[more]
PSBI_AGRST	2.885e-13	100.00	Photosystem II reaction center protein I OS=Agrost...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_14H04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14H04-O8-1-4.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX070119 ID=CX070119; Name=CX070119; organism=Citrus sinensis; type=EST; length=786bp
CGGGCTTTTTCAAGCATTATTTTTTGTGTAATGTAACATAGTCATTTTTT
TTTTTTTTTATTTTCAATTAGGAGAGATGGCTGAGTGGATTAAAGCGTCG
GATTGCTAATCCGGTGTACGAGTTCTTCGTACCGAGGGTTCGAATCCCTC
TCTTTCCGTTTCGGGCGATGGCTTGGTATTTTTCAAATTTAACTTTAGCG
AACACTTTTACTTTATTTTTAATAGTAACTGGGAATCAAAAAATCCTAAG
AACGTTTATACGAATAAAGTAAGCAACTCCTTCCTTTTTTATTCTTCGCG
TCCGGGATTACGCCCTGGATCATTAGACAGGAATCCGAAGATGAAGAGCG
AAACAAAGAATATCACTACGGTGTAAACAAAGAGTTTGAGAGTAAGCATT
ACACAATCTCCAAATCAGGTTTTTGGGGAAAAGGAAAAAGAGAATAGATT
CTCTATTTTTATACTACATATCCAATTTTGACATCAAGAAATGAAGTTCT
TTTTAGAATTTGATTCTCTAAATAGAAAATCGTTTTCATAAATTAAATTC
ACACAATTAGAATTCTACATTTTGGTTGGCTCTAATATAAGATGGTTTCA
GTGAAAAAGGGTCAAAATTGCAAATAGCAAATGGGGGATCAAAATGGATC
GCGGTTCCCCAAGAATTTCATTGTTTGAATGTTTGAATTGAGGCGGGGGT
TCGTTCATATTGTAAGACTCATCTGCTCTTATTTATTAATTGTTAGAATT
TTTTTTTTTTCGAACTAGAATAAATCATGAATTTTT