CX070094

Overview
NameCX070094
Unique NameCX070094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070094_ssr380 microsatellite CX070094_ssr380:380..389. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12360 contig Csv1_Contig12360:13..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070094 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 363.614 bits (932), Expect = 6.719e-100
Identity = 183/251 (72.91%), Postives = 217/251 (86.45%), Query Frame = 3
Query:   39 MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGA 770
            MA + CFLH  AL+++ AR+S   SSQR+VS  K   +VC+AQ+    E+D S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPK NTDF  Y+GDGF++ +P+KWNPS+E E+PGQVLRYEDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE +++     PYY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKGA
Sbjct:    1 MAYSACFLHQSALASSTARSSPSSSSQRYVSISK---LVCKAQQ--THEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGA 246          
BLAST of CX070094 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 9.725e-91
Identity = 161/203 (79.31%), Postives = 184/203 (90.64%), Query Frame = 3
Query:  174 EDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGA 770
            EDD S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF   NGDGF++ +P+KWNPS+E E+PGQVLRYEDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+ EGGFD +AVATANILE +++     PYY+LSVLTRTAD DEGGKHQLITATV GGKLYICKAQAGDKRWFKGA
Sbjct:    1 EDDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETACEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADEDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGA 203          
BLAST of CX070094 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.659e-90
Identity = 174/258 (67.44%), Postives = 195/258 (75.58%), Query Frame = 3
Query:   39 MASTQCFLHHHA-------LSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGA 770
            MAST CFLHHHA       LS T + T+     Q H + ++  +  C  +  A+       +SRRLALT+LIG AA+GS+VS ADAAYGESANVFGKPKTNTDF    GDGFK+ IPSKWNPSKE EFPGQVLRYEDNFD+ SNV V++ PTDKKSI DYGSPE+FLS+VDYLLGKQAY GKT SEGGF+P+AV TANILE S        YY + VLTRTADGDEGGKH LITATV  GKLYICKAQAGDKRWFKGA
Sbjct:    1 MASTACFLHHHAPSPATSNLSRTRSATNRDEQQQEHSARLQSPEADCATENDAL-------LSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQVDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGKHLLITATVSDGKLYICKAQAGDKRWFKGA 251          
BLAST of CX070094 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 4.228e-86
Identity = 167/250 (66.80%), Postives = 195/250 (78.00%), Query Frame = 3
Query:   39 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGSAV-SRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGA 770
            MAST CFLH      + AR ++S R    +  TQ+ VC+AQK      D + V SRR AL++L GAAA+  KVSPA AAYGE+ANVFGK K NTDF+ Y+G+GFKL IP+KWNPSKEREFPGQVLRYEDNFD+ SN+SVII PT KK+ITDYGSPEEFLS+V +LLG+Q+Y GKT SEGGF+ DAVATAN+LE+S        YY ++VLTRTADGDEGGKHQLITATV  GKLY+CKAQ  DKRWFKGA
Sbjct:    1 MASTSCFLHQ-----STARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAGAAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITDYGSPEEFLSQVGFLLGQQSYGGKTDSEGGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQR-DKRWFKGA 244          
BLAST of CX070094 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.604e-61
Identity = 132/250 (52.80%), Postives = 164/250 (65.60%), Query Frame = 3
Query:   39 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR-----PPYYFLSVLTRTADGDEGGKHQLITATV-KGGKLYICKAQAGDKRWFKGA 770
            MA+  C   + A +  P    +S+R       + +V RA         GS VSRR AL    GAAA+ S  SPA+AAYG+SANVFGK    + F+PY GDGF L +P+KWNPSKE +FPG +LRYEDNFD+ +N+ VI   TDKK+I D+GS ++FL  V YLLGKQAYSG+T SEGGF P+ V+ A++L+ S         YY   +L R+ADGDEGG+HQLI ATV    KLYI K Q GDKRWFKGA
Sbjct:    1 MATALC---NKAFAAAPVARPASRR-------SAVVVRAS--------GSDVSRRAALAGFAGAAALVSS-SPANAAYGDSANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFLESVSYLLGKQAYSGETQSEGGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVRSADGDEGGRHQLIGATVGSDNKLYIIKIQIGDKRWFKGA 231          
BLAST of CX070094 vs. ExPASy Swiss-Prot
Match: PSBP2_ARATH (Putative oxygen-evolving enhancer protein 2-2 OS=Arabidopsis thaliana GN=PSBP2 PE=5 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 7.296e-46
Identity = 91/111 (81.98%), Postives = 100/111 (90.09%), Query Frame = 3
Query:  450 IITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGA 770
            +ITPTDKKSITDYGSPE+FLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE S +      YY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKGA
Sbjct:    1 MITPTDKKSITDYGSPEQFLSQVNYLLGKQAYVGETASEGGFDANAVATANILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGA 111          
The following BLAST results are available for this feature:
BLAST of CX070094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP_SINAL6.719e-10072.91Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_BRAJU9.725e-9179.31Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS1.659e-9067.44Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT4.228e-8666.80Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE3.604e-6152.80Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_ARATH7.296e-4681.98Putative oxygen-evolving enhancer protein 2-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14G01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G01-M2-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070094 ID=CX070094; Name=CX070094; organism=Citrus sinensis; type=EST; length=771bp
AAAAATAAAAAATAAAGAGGAGAGAGCGAAAAGAAAAAATGGCATCAACT
CAATGCTTCTTGCACCACCATGCACTCTCTACTACACCAGCAAGAACATC
ATCATCTCAGCGCCACGTGTCGAACATCAAGCCCACCCAGATTGTCTGCC
GTGCGCAGAAGCAAGCTGTCCAAGAAGATGACGGCAGCGCCGTCTCCCGC
CGTTTGGCTCTGACGGTGCTCATTGGTGCTGCTGCCGTCGGCTCCAAGGT
CTCTCCTGCCGACGCTGCCTACGGTGAATCAGCCAATGTGTTTGGTAAGC
CAAAGACCAACACTGACTTCTTGCCATACAATGGAGATGGATTCAAGCTG
TCGATTCCCTCAAAATGGAACCCCAGCAAAGAGAGAGAGTTCCCGGGTCA
GGTTCTTAGATACGAAGACAACTTCGATTCCAACAGCAATGTCTCCGTCA
TAATCACCCCAACTGACAAGAAATCCATCACTGACTACGGTTCCCCCGAG
GAATTCCTCAGTAAGGTGGACTACTTGCTGGGAAAACAAGCCTATTCCGG
CAAAACTTCGTCTGAGGGTGGTTTCGACCCTGATGCTGTGGCAACAGCTA
ACATCTTGGAGGCTTCAGTCCGACCACCATACTACTTCTTGTCTGTATTA
ACAAGAACTGCTGATGGAGATGAAGGTGGCAAGCATCAACTAATTACAGC
CACGGTTAAAGGTGGCAAGCTTTACATCTGCAAGGCACAAGCTGGAGACA
AGAGGTGGTTTAAGGGAGCAA
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