CX070086

Overview
NameCX070086
Unique NameCX070086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_POPDE (Protein psbN OS=Populus deltoides GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_POPAL (Protein psbN OS=Populus alba GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_PHOTN (Protein psbN OS=Phormium tenax GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_PELHO (Protein psbN OS=Pelargonium hortorum GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_ORYSJ (Protein psbN OS=Oryza sativa subsp. japonica GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_ORYSI (Protein psbN OS=Oryza sativa subsp. indica GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_ORYSA (Protein psbN OS=Oryza sativa GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_ORYNI (Protein psbN OS=Oryza nivara GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_OENPA (Protein psbN OS=Oenothera parviflora GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_OENGL (Protein psbN OS=Oenothera glazioviana GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
The following BLAST results are available for this feature:
BLAST of CX070086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
PSBN_POPDE1.855e-1595.24Protein psbN OS=Populus deltoides GN=psbN PE=3 SV=... [more]
PSBN_POPAL1.855e-1595.24Protein psbN OS=Populus alba GN=psbN PE=3 SV=1[more]
PSBN_PHOTN1.855e-1595.24Protein psbN OS=Phormium tenax GN=psbN PE=3 SV=1[more]
PSBN_PELHO1.855e-1595.24Protein psbN OS=Pelargonium hortorum GN=psbN PE=3 ... [more]
PSBN_ORYSJ1.855e-1595.24Protein psbN OS=Oryza sativa subsp. japonica GN=ps... [more]
PSBN_ORYSI1.855e-1595.24Protein psbN OS=Oryza sativa subsp. indica GN=psbN... [more]
PSBN_ORYSA1.855e-1595.24Protein psbN OS=Oryza sativa GN=psbN PE=3 SV=1[more]
PSBN_ORYNI1.855e-1595.24Protein psbN OS=Oryza nivara GN=psbN PE=3 SV=1[more]
PSBN_OENPA1.855e-1595.24Protein psbN OS=Oenothera parviflora GN=psbN PE=3 ... [more]
PSBN_OENGL1.855e-1595.24Protein psbN OS=Oenothera glazioviana GN=psbN PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F09-K18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070086 ID=CX070086; Name=CX070086; organism=Citrus sinensis; type=EST; length=595bp
CAAAAACTTGGAGATCCAACTACAAGAAGACAAGTAGTCTGATGCAGCAT
TGCTCTACTATTTTAGTTTCTCACTTCTGCTTCTATTTTCGATTTGTGCT
TTTTATTTAAAATAAGGTATAAGGTACTGGAGAAATATGGATTTAAATCG
CCGCCCTTTTTGATTCTTTTTTTCTTTAATCCGGGGGATGATCCCAAATA
AACAGGTATGGAAGCTATAATTGGAAACCACGATCGAATTTATGGAAGCA
TTGGTTTATACATTCCTCTTAGTCTCGACTCTAGGGATCATTTTTTTCGC
TATCTTTTTTCGAGAACCGCCTAAAGTTCCAACTAAAAAAACAAAATGAT
TTTTTTTTATCTCAATGAAAGTAATGGGCCTCCCNNNATTGNNAGGCCCA
TTACTTCTACTTCAACTANTCCCCGTGTTCCTCNAATGGATCTCTTACTT
GTTGAGAGGGTTGCCCAAAAGCAGTATATAAGGCGTACCCAGTAAAACTT
ACAAGTAACCCAGATATAGAGATGGCGACTAGGGTTGCTGTTTCCATTAT
TATAGAATTTCAAGACCACACTGGATCCATGATAAGATCGTTTAT
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