CX070086

Overview
NameCX070086
Unique NameCX070086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_PSINU (Protein psbN OS=Psilotum nudum GN=psbN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = -1
Query:  425 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEH 547
            METATL+AI IS L+VSFTGYALYTAFGQPS+++RDP EEH
Sbjct:    1 METATLIAIFISCLIVSFTGYALYTAFGQPSKELRDPFEEH 41          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_STAPU (Protein psbN OS=Staurastrum punctulatum GN=psbN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = -1
Query:  425 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEH 547
            METATLV I IS LLVSFTGYALYTAFGQPS+++RDP EEH
Sbjct:    1 METATLVVIFISCLLVSFTGYALYTAFGQPSKELRDPFEEH 41          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_WELMI (Protein psbN OS=Welwitschia mirabilis GN=psbN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = -1
Query:  425 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEH 547
            METATLV ISIS LLVSFTGYA+YT+FG+PS+Q+RDP E+H
Sbjct:    1 METATLVTISISCLLVSFTGYAIYTSFGRPSEQLRDPFEDH 41          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_NECCR (Protein psbN OS=Neckera crispa GN=psbN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = -1
Query:  425 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEH 547
            METATLVAI IS  LVSFTGYALYTAFGQPS+++RDP EEH
Sbjct:    1 METATLVAIFISCSLVSFTGYALYTAFGQPSKELRDPFEEH 41          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_MARPO (Protein psbN OS=Marchantia polymorpha GN=psbN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = -1
Query:  425 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEH 547
            METAT VAI IS LL+SFTGYALYTAFGQPS ++RDP EEH
Sbjct:    1 METATFVAIFISCLLISFTGYALYTAFGQPSNELRDPFEEH 41          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_LEUSC (Protein psbN OS=Leucodon sciuroides GN=psbN PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = -1
Query:  425 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEH 547
            METATLVAI IS  LVSFTGYALYTAFGQPS+++RDP EEH
Sbjct:    1 METATLVAIFISCSLVSFTGYALYTAFGQPSKELRDPFEEH 41          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_HYPCP (Protein psbN OS=Hypnum cupressiforme GN=psbN PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = -1
Query:  425 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEH 547
            METATLVAI IS  LVSFTGYALYTAFGQPS+++RDP EEH
Sbjct:    1 METATLVAIFISCSLVSFTGYALYTAFGQPSKELRDPFEEH 41          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_HYLSP (Protein psbN OS=Hylocomium splendens GN=psbN PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = -1
Query:  425 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEH 547
            METATLVAI IS  LVSFTGYALYTAFGQPS+++RDP EEH
Sbjct:    1 METATLVAIFISCSLVSFTGYALYTAFGQPSKELRDPFEEH 41          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_HOOLU (Protein psbN OS=Hookeria lucens GN=psbN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = -1
Query:  425 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEH 547
            METATLVAI IS  LVSFTGYALYTAFGQPS+++RDP EEH
Sbjct:    1 METATLVAIFISCSLVSFTGYALYTAFGQPSKELRDPFEEH 41          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_LOPCO (Protein psbN OS=Lopidium concinnum GN=psbN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = -1
Query:  425 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEH 547
            METATL+AI IS  LVSFTGYALYTAFGQPS+++RDP EEH
Sbjct:    1 METATLIAIFISCSLVSFTGYALYTAFGQPSKELRDPFEEH 41          
The following BLAST results are available for this feature:
BLAST of CX070086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
PSBN_PSINU7.294e-1280.49Protein psbN OS=Psilotum nudum GN=psbN PE=3 SV=1[more]
PSBN_STAPU9.527e-1282.93Protein psbN OS=Staurastrum punctulatum GN=psbN PE... [more]
PSBN_WELMI1.625e-1178.05Protein psbN OS=Welwitschia mirabilis GN=psbN PE=3... [more]
PSBN_NECCR1.625e-1182.93Protein psbN OS=Neckera crispa GN=psbN PE=3 SV=1[more]
PSBN_MARPO1.625e-1180.49Protein psbN OS=Marchantia polymorpha GN=psbN PE=3... [more]
PSBN_LEUSC1.625e-1182.93Protein psbN OS=Leucodon sciuroides GN=psbN PE=3 S... [more]
PSBN_HYPCP1.625e-1182.93Protein psbN OS=Hypnum cupressiforme GN=psbN PE=3 ... [more]
PSBN_HYLSP1.625e-1182.93Protein psbN OS=Hylocomium splendens GN=psbN PE=3 ... [more]
PSBN_HOOLU1.625e-1182.93Protein psbN OS=Hookeria lucens GN=psbN PE=3 SV=1[more]
PSBN_LOPCO2.122e-1180.49Protein psbN OS=Lopidium concinnum GN=psbN PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F09-K18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070086 ID=CX070086; Name=CX070086; organism=Citrus sinensis; type=EST; length=595bp
CAAAAACTTGGAGATCCAACTACAAGAAGACAAGTAGTCTGATGCAGCAT
TGCTCTACTATTTTAGTTTCTCACTTCTGCTTCTATTTTCGATTTGTGCT
TTTTATTTAAAATAAGGTATAAGGTACTGGAGAAATATGGATTTAAATCG
CCGCCCTTTTTGATTCTTTTTTTCTTTAATCCGGGGGATGATCCCAAATA
AACAGGTATGGAAGCTATAATTGGAAACCACGATCGAATTTATGGAAGCA
TTGGTTTATACATTCCTCTTAGTCTCGACTCTAGGGATCATTTTTTTCGC
TATCTTTTTTCGAGAACCGCCTAAAGTTCCAACTAAAAAAACAAAATGAT
TTTTTTTTATCTCAATGAAAGTAATGGGCCTCCCNNNATTGNNAGGCCCA
TTACTTCTACTTCAACTANTCCCCGTGTTCCTCNAATGGATCTCTTACTT
GTTGAGAGGGTTGCCCAAAAGCAGTATATAAGGCGTACCCAGTAAAACTT
ACAAGTAACCCAGATATAGAGATGGCGACTAGGGTTGCTGTTTCCATTAT
TATAGAATTTCAAGACCACACTGGATCCATGATAAGATCGTTTAT
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