CX070086

Overview
NameCX070086
Unique NameCX070086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_BRADI (Protein psbN OS=Brachypodium distachyon GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_ANACO (Protein psbN OS=Ananas comosus GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_AGRST (Protein psbN OS=Agrostis stolonifera GN=psbN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_PHAVU (Protein psbN OS=Phaseolus vulgaris GN=psbN PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -1
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATL+AISISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLIAISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_PEA (Protein psbN OS=Pisum sativum GN=psbN PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.132e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = -1
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATL+AISISGL+VSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLIAISISGLIVSFTGYALYTAFGQPSQQLRDPFEEHG 42          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_HOUCO (Protein psbN OS=Houttuynia cordata GN=psbN PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.132e-15
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -1
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPS+Q+RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSEQLRDPFEEHG 42          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_CICAR (Protein psbN OS=Cicer arietinum GN=psbN PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.132e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = -1
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATL+AISISGL+VSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLIAISISGLIVSFTGYALYTAFGQPSQQLRDPFEEHG 42          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_PHAAO (Protein psbN OS=Phalaenopsis aphrodite subsp. formosana GN=psbN PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.397e-15
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -1
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQ++RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQKLRDPFEEHG 42          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_COECR (Protein psbN OS=Coelogyne cristata GN=psbN PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.397e-15
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -1
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISGLLVSFTGYALYTAFGQPSQ++RDP EEHG
Sbjct:    1 METATLVAISISGLLVSFTGYALYTAFGQPSQKLRDPFEEHG 42          
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_YUCGL (Protein psbN OS=Yucca glauca GN=psbN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -1
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAI ISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42          
The following BLAST results are available for this feature:
BLAST of CX070086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
PSBN_BRADI1.855e-1595.24Protein psbN OS=Brachypodium distachyon GN=psbN PE... [more]
PSBN_ANACO1.855e-1595.24Protein psbN OS=Ananas comosus GN=psbN PE=3 SV=1[more]
PSBN_AGRST1.855e-1595.24Protein psbN OS=Agrostis stolonifera GN=psbN PE=3 ... [more]
PSBN_PHAVU2.423e-1592.86Protein psbN OS=Phaseolus vulgaris GN=psbN PE=3 SV... [more]
PSBN_PEA4.132e-1590.48Protein psbN OS=Pisum sativum GN=psbN PE=3 SV=2[more]
PSBN_HOUCO4.132e-1592.86Protein psbN OS=Houttuynia cordata GN=psbN PE=3 SV... [more]
PSBN_CICAR4.132e-1590.48Protein psbN OS=Cicer arietinum GN=psbN PE=3 SV=1[more]
PSBN_PHAAO5.397e-1592.86Protein psbN OS=Phalaenopsis aphrodite subsp. form... [more]
PSBN_COECR5.397e-1592.86Protein psbN OS=Coelogyne cristata GN=psbN PE=3 SV... [more]
PSBN_YUCGL9.206e-1592.86Protein psbN OS=Yucca glauca GN=psbN PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F09-K18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070086 ID=CX070086; Name=CX070086; organism=Citrus sinensis; type=EST; length=595bp
CAAAAACTTGGAGATCCAACTACAAGAAGACAAGTAGTCTGATGCAGCAT
TGCTCTACTATTTTAGTTTCTCACTTCTGCTTCTATTTTCGATTTGTGCT
TTTTATTTAAAATAAGGTATAAGGTACTGGAGAAATATGGATTTAAATCG
CCGCCCTTTTTGATTCTTTTTTTCTTTAATCCGGGGGATGATCCCAAATA
AACAGGTATGGAAGCTATAATTGGAAACCACGATCGAATTTATGGAAGCA
TTGGTTTATACATTCCTCTTAGTCTCGACTCTAGGGATCATTTTTTTCGC
TATCTTTTTTCGAGAACCGCCTAAAGTTCCAACTAAAAAAACAAAATGAT
TTTTTTTTATCTCAATGAAAGTAATGGGCCTCCCNNNATTGNNAGGCCCA
TTACTTCTACTTCAACTANTCCCCGTGTTCCTCNAATGGATCTCTTACTT
GTTGAGAGGGTTGCCCAAAAGCAGTATATAAGGCGTACCCAGTAAAACTT
ACAAGTAACCCAGATATAGAGATGGCGACTAGGGTTGCTGTTTCCATTAT
TATAGAATTTCAAGACCACACTGGATCCATGATAAGATCGTTTAT
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