CX070086

Overview
NameCX070086
Unique NameCX070086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_CRUWA (Protein psbN OS=Crucihimalaya wallichii GN=psbN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAI ISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_CORMA (Protein psbN OS=Cornus mas GN=psbN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAI ISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_COFAR (Protein psbN OS=Coffea arabica GN=psbN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAI ISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_CHLSC (Protein psbN OS=Chloranthus spicatus GN=psbN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISG LVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGSLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_CAPBU (Protein psbN OS=Capsella bursa-pastoris GN=psbN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAI ISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_CANWI (Protein psbN OS=Canella winterana GN=psbN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAI ISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_CALFG (Protein psbN OS=Calycanthus floridus var. glaucus GN=psbN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAISISG LVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAISISGSLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_BEREX (Protein psbN OS=Bertholletia excelsa GN=psbN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAI ISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_BASHY (Protein psbN OS=Bassia hyssopifolia GN=psbN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAI ISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
[Close]
BLAST of CX070086 vs. ExPASy Swiss-Prot
Match: PSBN_BARVE (Protein psbN OS=Barbarea verna GN=psbN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -1 
Query:  422 METATLVAISISGLLVSFTGYALYTAFGQPSQQVRDPXEEHG 547
            METATLVAI ISGLLVSFTGYALYTAFGQPSQQ+RDP EEHG
Sbjct:    1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHG 42
The following BLAST results are available for this feature:
BLAST of CX070086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
PSBN_CRUWA9.206e-1592.86Protein psbN OS=Crucihimalaya wallichii GN=psbN PE... [more]
PSBN_CORMA9.206e-1592.86Protein psbN OS=Cornus mas GN=psbN PE=3 SV=1[more]
PSBN_COFAR9.206e-1592.86Protein psbN OS=Coffea arabica GN=psbN PE=3 SV=1[more]
PSBN_CHLSC9.206e-1592.86Protein psbN OS=Chloranthus spicatus GN=psbN PE=3 ... [more]
PSBN_CAPBU9.206e-1592.86Protein psbN OS=Capsella bursa-pastoris GN=psbN PE... [more]
PSBN_CANWI9.206e-1592.86Protein psbN OS=Canella winterana GN=psbN PE=3 SV=... [more]
PSBN_CALFG9.206e-1592.86Protein psbN OS=Calycanthus floridus var. glaucus ... [more]
PSBN_BEREX9.206e-1592.86Protein psbN OS=Bertholletia excelsa GN=psbN PE=3 ... [more]
PSBN_BASHY9.206e-1592.86Protein psbN OS=Bassia hyssopifolia GN=psbN PE=3 S... [more]
PSBN_BARVE9.206e-1592.86Protein psbN OS=Barbarea verna GN=psbN PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F09-K18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070086 ID=CX070086; Name=CX070086; organism=Citrus sinensis; type=EST; length=595bp
CAAAAACTTGGAGATCCAACTACAAGAAGACAAGTAGTCTGATGCAGCAT
TGCTCTACTATTTTAGTTTCTCACTTCTGCTTCTATTTTCGATTTGTGCT
TTTTATTTAAAATAAGGTATAAGGTACTGGAGAAATATGGATTTAAATCG
CCGCCCTTTTTGATTCTTTTTTTCTTTAATCCGGGGGATGATCCCAAATA
AACAGGTATGGAAGCTATAATTGGAAACCACGATCGAATTTATGGAAGCA
TTGGTTTATACATTCCTCTTAGTCTCGACTCTAGGGATCATTTTTTTCGC
TATCTTTTTTCGAGAACCGCCTAAAGTTCCAACTAAAAAAACAAAATGAT
TTTTTTTTATCTCAATGAAAGTAATGGGCCTCCCNNNATTGNNAGGCCCA
TTACTTCTACTTCAACTANTCCCCGTGTTCCTCNAATGGATCTCTTACTT
GTTGAGAGGGTTGCCCAAAAGCAGTATATAAGGCGTACCCAGTAAAACTT
ACAAGTAACCCAGATATAGAGATGGCGACTAGGGTTGCTGTTTCCATTAT
TATAGAATTTCAAGACCACACTGGATCCATGATAAGATCGTTTAT
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