CX070084

Overview
NameCX070084
Unique NameCX070084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_MYCLE (Acetolactate synthase small subunit OS=Mycobacterium leprae GN=ilvH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.987e-31
Identity = 72/158 (45.57%), Postives = 106/158 (67.09%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLG 703
            HT+SV V D  G++ R+A +F+RRG+NIESLAVG  + K +   TIVV   +  L+QV +QL KL+NV+KV +   +  + REL LIKV A+   R+++   V +FRA+++D+S  SLT+E TGD  K+ A+ R L  FG+REI ++G ++L R   G
Sbjct:    7 HTLSVLVEDTPGVLARVAALFSRRGFNIESLAVGATECKTMSRMTIVVSAEETPLEQVTKQLHKLINVIKVVEQEADNSLSRELALIKVRAEAGTRSQVIEAVHLFRARVIDVSLESLTVEATGDCSKIEALLRVLEPFGVREIVQSGVVSLSRGPRG 164          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_METTH (Probable acetolactate synthase small subunit OS=Methanobacterium thermoautotrophicum GN=ilvH PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.695e-29
Identity = 70/155 (45.16%), Postives = 104/155 (67.10%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKF-RAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 691
            H IS  V  + G++ R+AG+F RRG+NIE++ VG ++   +   TI+  G D+VL+Q+ +QL KL++V+KV DL     V+REL ++KV+A  +  R+EI    +IFR +IVD+S  +LT+EVTGD  K+ A    L  FGI+E+ARTG  A+ R
Sbjct:    9 HIISALVEHKPGVLQRVAGLFTRRGFNIENITVGESETPGIARMTIIARGDDRVLEQITKQLNKLIDVIKVRDLEPAATVKRELCMVKVHAPSESERSEIIQYTNIFRGRIVDVSPDALTVEVTGDSEKIDAFLELLRNFGIKELARTGPTAMSR 163          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_MYCAV (Acetolactate synthase small subunit OS=Mycobacterium avium GN=ilvH PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.215e-27
Identity = 66/136 (48.53%), Postives = 95/136 (69.85%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLN--KDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNL 637
            HT+SV V  + G++ R+A +F+RRG+NIESLAVG    KD +  TIVV   +  L+Q+ +QL KL+NV+K+ +L +   V REL LIKV AD   R+++   V++FRAK++D+S  +LTIE TGD GK+ A+ R L
Sbjct:    6 HTLSVLVEAKPGVLARVAALFSRRGFNIESLAVGATEQKDMSRMTIVVSAEETPLEQITKQLNKLINVIKIVELEDGNSVSRELALIKVRADAGTRSQVIEAVNLFRAKVIDVSPEALTIEATGDRGKIEALLRVL 141          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_METJA (Probable acetolactate synthase small subunit OS=Methanocaldococcus jannaschii GN=ilvH PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.615e-27
Identity = 66/155 (42.58%), Postives = 102/155 (65.81%), Query Frame = 2
Query:  236 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPK-FRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 691
            H IS  V ++ G++ RI+G+F RRG+NI S+ VG+ ++  +   TIVV G DK+L+QV++QL KL++V+KV +L  +  V+REL LIK+ A  +  ++++     IFR  +VD+S  SL +E+TG   K+ A    +   GI+E+ARTG  AL R
Sbjct:    9 HVISALVLNKPGVLQRISGLFTRRGFNISSITVGITENPQISRVTIVVNGDDKILEQVIKQLNKLIDVIKVSELEEKKSVQRELCLIKIYAPTESAKSQVIQYTSIFRGNVVDLSPESLIVEITGSEDKINAFIDLVKPLGIKEMARTGITALAR 163          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_BACSU (Acetolactate synthase small subunit OS=Bacillus subtilis GN=ilvH PE=3 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.754e-26
Identity = 66/154 (42.86%), Postives = 101/154 (65.58%), Query Frame = 2
Query:  242 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK----DKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 691
            I++ V + SG++NRI G+F +R YNIES+ VG  +     +  F + V G + V +Q+ +QL K ++VLKV D++N+  V+REL LIKV + P  R EI  +++ FRA +VD+S  S+ ++VTG+  K+ A+   L  +GI+EIARTG  A  R
Sbjct:    5 ITLTVVNRSGVLNRITGLFTKRHYNIESITVGHTETAGVSRITFVVHVEGENDV-EQLTKQLNKQIDVLKVTDITNQSIVQRELALIKVVSAPSTRTEINGIIEPFRASVVDVSRDSIVVQVTGESNKIEALIELLKPYGIKEIARTGTTAFAR 157          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_ECOLI (Acetolactate synthase isozyme 3 small subunit OS=Escherichia coli (strain K12) GN=ilvH PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.257e-24
Identity = 64/155 (41.29%), Postives = 101/155 (65.16%), Query Frame = 2
Query:  242 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKM---VAVQRNLSKFGIREIARTGKIALRR 691
            +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G +KVL+Q+ +QL KLV+VL+V +L     VERE+ML+K+ A    R E++   +IFR +I+D++    T+++ G  GK+   +A  R+++K  I E+AR+G + L R
Sbjct:    5 LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAK--IVEVARSGVVGLSR 157          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_SALTY (Acetolactate synthase isozyme 3 small subunit OS=Salmonella typhimurium GN=ilvH PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.776e-24
Identity = 63/155 (40.65%), Postives = 100/155 (64.52%), Query Frame = 2
Query:  242 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKM---VAVQRNLSKFGIREIARTGKIALRR 691
            +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G +KVL+Q+ +QL KLV+VL+V +L     VERE+ML+K+ A    R E++   +IFR +I+D++    T+++ G   K+   +A  R+++K  I E+AR+G + L R
Sbjct:    5 LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGREEVKRNTEIFRGQIIDVTPTLYTVQLAGTSDKLDAFLASLRDVAK--IVEVARSGVVGLSR 157          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_HAEIN (Acetolactate synthase small subunit OS=Haemophilus influenzae GN=ilvH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.423e-22
Identity = 62/153 (40.52%), Postives = 96/153 (62.75%), Query Frame = 2
Query:  242 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVA-VQRNLSKFGIREIARTGKIALRR 691
            +SV + +ESG ++R+ G+F++R +NIESL V    D  L   TI   G  + L+Q+ +QL KLV+V KV +LS +  +ERE++L KV A    R EI+ L DIFR +IVD++  S TI+++G   K+ A +     +  + EI R+G I++ R
Sbjct:    5 LSVLLENESGALSRVVGLFSQRAFNIESLTVAPTDDPTLSRMTIEAVGDAQALEQIEKQLHKLVDVFKVVNLSEQEHIEREIVLAKVRAVGSSRDEIKRLADIFRGQIVDVTPKSYTIQLSGTNDKVDAFISALKEETTLLEIVRSGLISVSR 157          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_LACLA (Acetolactate synthase small subunit OS=Lactococcus lactis subsp. lactis GN=ilvH PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.301e-21
Identity = 57/146 (39.04%), Postives = 95/146 (65.07%), Query Frame = 2
Query:  266 SGMINRIAGVFARRGYNIESLAVGLNKDKAL----FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 691
            +G++NR   V  RR  NI S+  G+ + + L    F I V   D+V +Q+++QL +L++V++V D+++ P VERE++LIKV+A P  RAEI  +++ FR  +VD++  ++TI++TGD  K+ A+   +S +GI  +ARTG     R
Sbjct:   13 TGIMNRFTAVLNRRQVNILSITAGVTESQDLTHTTFVIEVDHLDEV-EQIIKQLNRLIDVIEVADITDLPHVEREVVLIKVSAPPTIRAEIFTMIEPFRVNVVDVNLENVTIQLTGDSAKIEALIDVVSPYGILNMARTGSAGFER 157          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_BUCAI (Acetolactate synthase small subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ilvH PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.455e-21
Identity = 50/153 (32.68%), Postives = 97/153 (63.40%), Query Frame = 2
Query:  242 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFG-IREIARTGKIALRR 691
            +S+ + +ESG ++R+ G+F++RGYNIE++ +   +D  L   TI   G +K ++Q+ +QL KL++VL+V  +     +ERE++L+KV  +   R +I+ + ++FR +IVDI+  +  ++++G   K+ A  + +  F  I E+ R+G + + R
Sbjct:    5 LSILLENESGALSRVIGLFSQRGYNIETITLAPTEDPTLSKMTIQTVGNEKAIEQIEKQLHKLIDVLRVVQIGQSSHIEREIVLLKVQINNHRRDDIKHITEVFRGQIVDITSATYILQLSGTTKKIDAFLKIIRNFSEIIEVTRSGIVGISR 157          
The following BLAST results are available for this feature:
BLAST of CX070084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ILVH_MYCLE8.987e-3145.57Acetolactate synthase small subunit OS=Mycobacteri... [more]
ILVH_METTH1.695e-2945.16Probable acetolactate synthase small subunit OS=Me... [more]
ILVH_MYCAV1.215e-2748.53Acetolactate synthase small subunit OS=Mycobacteri... [more]
ILVH_METJA4.615e-2742.58Probable acetolactate synthase small subunit OS=Me... [more]
ILVH_BACSU1.754e-2642.86Acetolactate synthase small subunit OS=Bacillus su... [more]
ILVH_ECOLI1.257e-2441.29Acetolactate synthase isozyme 3 small subunit OS=E... [more]
ILVH_SALTY4.776e-2440.65Acetolactate synthase isozyme 3 small subunit OS=S... [more]
ILVH_HAEIN3.423e-2240.52Acetolactate synthase small subunit OS=Haemophilus... [more]
ILVH_LACLA1.301e-2139.04Acetolactate synthase small subunit OS=Lactococcus... [more]
ILVH_BUCAI6.455e-2132.68Acetolactate synthase small subunit OS=Buchnera ap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F08-K16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070084 ID=CX070084; Name=CX070084; organism=Citrus sinensis; type=EST; length=790bp
GTTGCAATCACCATCAACCTGTTTCCTAAAACCCTGCTCCGACTCGCTTC
CTAATCTTGGGTTCTCAATATCTGTAAGTTTTTCGCCGTCAGTTTCCTCT
TCGCTCTCAAAATCGAACAAAATATTTCTTCACTCTGAGCCCAAGAAACT
CGCTGTCTCTGCAAGAAGTGCCGATGAGAATATCACTGAGGGCACTTTCA
CTTCCCGTTCTACTAACCGCACCAATGTGCGACGGCACACAATTTCCGTG
TTCGTCGGGGATGAAAGTGGAATGATCAACCGGATTGCTGGGGTCTTTGC
AAGGAGGGGATATAACATTGAGTCCCTCGCTGTCGGTCTGAACAAGGACA
AGGCACTCTTCACCATAGTTGTTTATGGAACTGATAAGGTGCTGCAGCAA
GTTATGGAGCAGCTTCAGAAACTTGTTAATGTTTTGAAGGTTGAAGATCT
CTCAAATGAACCCCAGGTTGAACGTGAATTAATGCTCATAAAAGTGAATG
CAGATCCAAAGTTCCGTGCTGAGATCAGGTGGTTGGTGGACATATTTAGA
GCGAAAATTGTGGATATCTCAGAATACTCTCTGACAATTGAGGTAACTGG
AGATCCGGGGAAGATGGTTGCTGTTCAAAGAAACTTAAGCAAGTTTGGGA
TCAGAGAAATTGCGAGAACTGGAAAGATTGCTTTGAGAAGGGAAAAGTTG
GGTGCTTCTGCTCCATTTTGGCGATTTTCAGCAGCTTCATATCCAGATCT
TAATGAAACGCCTACTATTGACGGCCTCGTTGGGGCAGGA
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