CX070084

Overview
NameCX070084
Unique NameCX070084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_BUCAP (Acetolactate synthase small subunit OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ilvH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.101e-20
Identity = 52/155 (33.55%), Postives = 100/155 (64.52%), Query Frame = 2
Query:  242 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKM---VAVQRNLSKFGIREIARTGKIALRR 691
            +SV + +ESG ++R+ G+F++RGYNIE++ V   +D +L   TI   G +K ++Q+ +QL KL++VL+V  +     +ERE+ML+KV  +   + +++ + ++FR +IVDI+  +  +++TG   K+   + + RN ++  I E+ R+G + + R
Sbjct:    5 LSVLLENESGALSRVIGLFSQRGYNIETITVAPTEDPSLSKMTIQTIGNEKSIEQIEKQLHKLIDVLRVIKVGQNSHIEREIMLLKVQTNNCKKDDVKHITEVFRGQIVDITSTTYVLQITGTAKKLDSFLKIIRNTTE--IIEMTRSGIVGIAR 157          
BLAST of CX070084 vs. ExPASy Swiss-Prot
Match: ILVH_BUCBP (Acetolactate synthase small subunit OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ilvH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.680e-18
Identity = 50/153 (32.68%), Postives = 96/153 (62.75%), Query Frame = 2
Query:  242 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKM---VAVQRNLSKFGIREIARTGKIAL 685
            +S+ + +ESG ++R+ G+F++RGYNIES+ V   +D ++   TI  +G  KV++Q+ +QL KL++VLKV ++ +E   +RE+MLIK+N       +++ + + FR  I+  +     I+++G    +   + + + L+   I EI+R+G I++
Sbjct:    6 LSILLENESGALSRVVGLFSQRGYNIESITVAPTEDLSISKITIQTFGDKKVIEQIGKQLHKLIDVLKVTEIEDEEHFKREIMLIKINNTYDQYRKVQDITNAFRGYIISATSNISIIQLSGTNKNLDTYIEIMKKLT--NIIEISRSGIISI 156          
The following BLAST results are available for this feature:
BLAST of CX070084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ILVH_BUCAP1.101e-2033.55Acetolactate synthase small subunit OS=Buchnera ap... [more]
ILVH_BUCBP6.680e-1832.68Acetolactate synthase small subunit OS=Buchnera ap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F08-K16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070084 ID=CX070084; Name=CX070084; organism=Citrus sinensis; type=EST; length=790bp
GTTGCAATCACCATCAACCTGTTTCCTAAAACCCTGCTCCGACTCGCTTC
CTAATCTTGGGTTCTCAATATCTGTAAGTTTTTCGCCGTCAGTTTCCTCT
TCGCTCTCAAAATCGAACAAAATATTTCTTCACTCTGAGCCCAAGAAACT
CGCTGTCTCTGCAAGAAGTGCCGATGAGAATATCACTGAGGGCACTTTCA
CTTCCCGTTCTACTAACCGCACCAATGTGCGACGGCACACAATTTCCGTG
TTCGTCGGGGATGAAAGTGGAATGATCAACCGGATTGCTGGGGTCTTTGC
AAGGAGGGGATATAACATTGAGTCCCTCGCTGTCGGTCTGAACAAGGACA
AGGCACTCTTCACCATAGTTGTTTATGGAACTGATAAGGTGCTGCAGCAA
GTTATGGAGCAGCTTCAGAAACTTGTTAATGTTTTGAAGGTTGAAGATCT
CTCAAATGAACCCCAGGTTGAACGTGAATTAATGCTCATAAAAGTGAATG
CAGATCCAAAGTTCCGTGCTGAGATCAGGTGGTTGGTGGACATATTTAGA
GCGAAAATTGTGGATATCTCAGAATACTCTCTGACAATTGAGGTAACTGG
AGATCCGGGGAAGATGGTTGCTGTTCAAAGAAACTTAAGCAAGTTTGGGA
TCAGAGAAATTGCGAGAACTGGAAAGATTGCTTTGAGAAGGGAAAAGTTG
GGTGCTTCTGCTCCATTTTGGCGATTTTCAGCAGCTTCATATCCAGATCT
TAATGAAACGCCTACTATTGACGGCCTCGTTGGGGCAGGA
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