CX070083

Overview
NameCX070083
Unique NameCX070083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_ARCFU (Probable acetolactate synthase small subunit OS=Archaeoglobus fulgidus GN=ilvH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.956e-30
Identity = 71/154 (46.10%), Postives = 105/154 (68.18%), Query Frame = -2
Query:  191 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 652
            HT+++LV + PGVL  V G+F RRG+NI+SL VG  E + LSR+T VV   D+ + ++++QL KLI+  +V ++T     EREL LI+V      R +++++  IFRA+ VDVS  +  +E+TGD DK+ A   L+  YGI E+ARTG+VA+VR
Sbjct:    3 HTIAVLVENKPGVLARVAGLFRRRGFNIESLTVGTTERDDLSRMTIVVEGDDKVVEQVIKQLNKLIETIKVSEITE-SSVERELCLIRVHAPPEKRGEIVELTNIFRARIVDVSRDSFIIEVTGDEDKVSAFIDLMRQYGIKELARTGKVAMVR 155          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_METTH (Probable acetolactate synthase small subunit OS=Methanobacterium thermoautotrophicum GN=ilvH PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.574e-29
Identity = 67/158 (42.41%), Postives = 102/158 (64.56%), Query Frame = -2
Query:  185 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKV-AVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRES 655
            +H +S LV   PGVL  V G+F RRG+NI+++ VG +ET G++R+T +    D  + ++ +QL KLID+ +VRDL      +REL ++KV A + + R +++    IFR + VDVS   +T+E+TGD +K+ A   LL  +GI E+ARTG  A+ R S
Sbjct:    8 THIISALVEHKPGVLQRVAGLFTRRGFNIENITVGESETPGIARMTIIARGDDRVLEQITKQLNKLIDVIKVRDLEPAATVKRELCMVKVHAPSESERSEIIQYTNIFRGRIVDVSPDALTVEVTGDSEKIDAFLELLRNFGIKELARTGPTAMSRGS 165          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_BACSU (Acetolactate synthase small subunit OS=Bacillus subtilis GN=ilvH PE=3 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 9.508e-29
Identity = 70/153 (45.75%), Postives = 101/153 (66.01%), Query Frame = -2
Query:  191 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDES-ISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 646
            +++ V +  GVLN +TG+F +R YNI+S+ VGH ET G+SRIT VV    E+ + +L +QL K ID+ +V D+T+    +REL LIKV    + R ++  I   FRA  VDVS  +I +++TG+ +K+ AL  LL+PYGI E+ARTG  A  R
Sbjct:    5 ITLTVVNRSGVLNRITGLFTKRHYNIESITVGHTETAGVSRITFVVHVEGENDVEQLTKQLNKQIDVLKVTDITNQSIVQRELALIKVVSAPSTRTEINGIIEPFRASVVDVSRDSIVVQVTGESNKIEALIELLKPYGIKEIARTGTTAFAR 157          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_METJA (Probable acetolactate synthase small subunit OS=Methanocaldococcus jannaschii GN=ilvH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.899e-27
Identity = 66/155 (42.58%), Postives = 99/155 (63.87%), Query Frame = -2
Query:  191 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKV-AVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 652
            H +S LV + PGVL  ++G+F RRG+NI S+ VG  E   +SR+T VV   D+ + ++++QL KLID+ +V +L      +REL LIK+ A   +A+  V+   +IFR   VD+S  ++ +E+TG  DK+ A   L++P GI E+ARTG  AL R
Sbjct:    9 HVISALVLNKPGVLQRISGLFTRRGFNISSITVGITENPQISRVTIVVNGDDKILEQVIKQLNKLIDVIKVSELEEKKSVQRELCLIKIYAPTESAKSQVIQYTSIFRGNVVDLSPESLIVEITGSEDKINAFIDLVKPLGIKEMARTGITALAR 163          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_MYCAV (Acetolactate synthase small subunit OS=Mycobacterium avium GN=ilvH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.417e-26
Identity = 63/140 (45.00%), Postives = 92/140 (65.71%), Query Frame = -2
Query:  239 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEP 658
            ++HTLS+LV   PGVL  V  +F+RRG+NI+SLAVG  E + +SR+T VV A +  + ++ +QL KLI++ ++ +L       REL LIKV  +   R  V++   +FRAK +DVS   +T+E TGD  K+ AL R+LEP
Sbjct:    4 QTHTLSVLVEAKPGVLARVAALFSRRGFNIESLAVGATEQKDMSRMTIVVSAEETPLEQITKQLNKLINVIKIVELEDGNSVSRELALIKVRADAGTRSQVIEAVNLFRAKVIDVSPEALTIEATGDRGKIEALLRVLEP 143          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_LACLA (Acetolactate synthase small subunit OS=Lactococcus lactis subsp. lactis GN=ilvH PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.470e-21
Identity = 56/144 (38.89%), Postives = 86/144 (59.72%), Query Frame = -2
Query:  191 GVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-ESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 619
            G++N  T V  RR  NI S+  G  E++ L+  T V+     + + ++++QL +LID+ EV D+T LP  ERE++LIKV+   T R ++  +   FR   VDV+   +T++LTGD  K+ AL  ++ PYGI  +ARTG     R
Sbjct:   14 GIMNRFTAVLNRRQVNILSITAGVTESQDLTHTTFVIEVDHLDEVEQIIKQLNRLIDVIEVADITDLPHVEREVVLIKVSAPPTIRAEIFTMIEPFRVNVVDVNLENVTIQLTGDSAKIEALIDVVSPYGILNMARTGSAGFER 157          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_BUCAI (Acetolactate synthase small subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ilvH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.054e-19
Identity = 52/153 (33.99%), Postives = 92/153 (60.13%), Query Frame = -2
Query:  191 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYG-ICEVARTGRVALVR 646
            LS+L+ +  G L+ V G+F++RGYNI+++ +   E   LS++T      +++I ++ +QL+KLID+  V  +      ERE++L+KV +N   R D+  I  +FR + VD++  T  L+L+G   K+ A  +++  +  I EV R+G V + R
Sbjct:    5 LSILLENESGALSRVIGLFSQRGYNIETITLAPTEDPTLSKMTIQTVGNEKAIEQIEKQLHKLIDVLRVVQIGQSSHIEREIVLLKVQINNHRRDDIKHITEVFRGQIVDITSATYILQLSGTTKKIDAFLKIIRNFSEIIEVTRSGIVGISR 157          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILV6_SCHPO (Probable acetolactate synthase small subunit OS=Schizosaccharomyces pombe GN=SPBC14C8.04 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.376e-19
Identity = 61/196 (31.12%), Postives = 91/196 (46.43%), Query Frame = -2
Query:  191 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAV--------------------NTTARRD--------------------VLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 658
            + H  + LV + PGVL+ ++G+ A RG+NI SL V   E E LSR+T V+   DE + +  +Q+  ++ +  V D T     EREL+L KV++                    N  A+ D                    +  + T+F  +  D+S  TI LELT   D++     LL PYG+ E  RTG  A+ R
Sbjct:   69 KRHVFNCLVQNEPGVLSRLSGILAARGFNIDSLVVCATEVENLSRMTIVLRGADEVVEQAKRQIEDIVSVWAVLDYTGTSMVERELLLAKVSLLGPDHFQEHFERSEKVAESTNAKAKSDGEGVMNANAALQLRASQLAAINQLTTLFHGRVADISTETIILELTATPDRVDNFLSLLRPYGVLEACRTGTSAMTR 264          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_BUCAP (Acetolactate synthase small subunit OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ilvH PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.797e-19
Identity = 53/153 (34.64%), Postives = 90/153 (58.82%), Query Frame = -2
Query:  191 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLL-EPYGICEVARTGRVALVR 646
            LS+L+ +  G L+ V G+F++RGYNI+++ V   E   LS++T      ++SI ++ +QL+KLID+  V  +      ERE+ML+KV  N   + DV  I  +FR + VD++  T  L++TG   K+ +  +++     I E+ R+G V + R
Sbjct:    5 LSVLLENESGALSRVIGLFSQRGYNIETITVAPTEDPSLSKMTIQTIGNEKSIEQIEKQLHKLIDVLRVIKVGQNSHIEREIMLLKVQTNNCKKDDVKHITEVFRGQIVDITSTTYVLQITGTAKKLDSFLKIIRNTTEIIEMTRSGIVGIAR 157          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_SALTY (Acetolactate synthase isozyme 3 small subunit OS=Salmonella typhimurium GN=ilvH PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.066e-19
Identity = 57/153 (37.25%), Postives = 90/153 (58.82%), Query Frame = -2
Query:  191 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVA-LQRLLEPYGICEVARTGRVALVR 646
            LS+L+ +  G L+ V G+F++RGYNI+SL V   +   LSR+T      ++ + ++ +QL+KL+D+  V +L      ERE+ML+K+  +   R +V     IFR + +DV+    T++L G  DK+ A L  L +   I EVAR+G V L R
Sbjct:    5 LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGREEVKRNTEIFRGQIIDVTPTLYTVQLAGTSDKLDAFLASLRDVAKIVEVARSGVVGLSR 157          
The following BLAST results are available for this feature:
BLAST of CX070083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ILVH_ARCFU2.956e-3046.10Probable acetolactate synthase small subunit OS=Ar... [more]
ILVH_METTH5.574e-2942.41Probable acetolactate synthase small subunit OS=Me... [more]
ILVH_BACSU9.508e-2945.75Acetolactate synthase small subunit OS=Bacillus su... [more]
ILVH_METJA8.899e-2742.58Probable acetolactate synthase small subunit OS=Me... [more]
ILVH_MYCAV4.417e-2645.00Acetolactate synthase small subunit OS=Mycobacteri... [more]
ILVH_LACLA1.470e-2138.89Acetolactate synthase small subunit OS=Lactococcus... [more]
ILVH_BUCAI1.054e-1933.99Acetolactate synthase small subunit OS=Buchnera ap... [more]
ILV6_SCHPO1.376e-1931.12Probable acetolactate synthase small subunit OS=Sc... [more]
ILVH_BUCAP1.797e-1934.64Acetolactate synthase small subunit OS=Buchnera ap... [more]
ILVH_SALTY3.066e-1937.25Acetolactate synthase isozyme 3 small subunit OS=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_14F08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F08-K16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070083 ID=CX070083; Name=CX070083; organism=Citrus sinensis; type=EST; length=854bp
TTTTTGGAAGTGCAACCCTTTGTGTGTGGGGGGGTGGGGTTAAAAAAACA
ATATCTCTGCTAAATTGCAAGCTACAAAATTTCCTTTCTGTGAACCGGCA
AAGCATAAATAACTAATTGATTTGCTACAAGTCTCCGAATTACAAAGGAA
ATGAATATCCACGAAGATACTTGGAATCCACGCCTGATTCACGAACCAAT
GCTACTCGACCGGTTCGTGCCACCTCGCAAATTCCATAAGGCTCTAACAG
TCTCTGCAGTGCAACCATCTTGTCCAAATCTCCTGTAAGCTCAAGAGTAA
TCGTGTGATCGGATACATCAACTGCTTTGGCCCTAAATATGGTGGCAATG
TCAAGAACATCTCTTCGAGCAGTGGTATTTACAGCAACCTTTATCAACAT
CAATTCTCGTTCAGCAAATGGCAAATGAGTAAGATCCCGAACCTCATGTA
GATCTATTAGCTTATAAAGTTGCTGCATCAACTTGCTAATTGATTCATCT
GTAGCGGGAACAACTGTTGTAATTCGTGAGAGCCCCTCAGTTTCTGCATG
TCCAACAGCCAAACTCTGAATGTTATAGCCCCTTCGAGCAAAAACCCCTG
TAACAATGTTAAGAACTCCTGGAGAGTCATTCACAAGCATGGATAAAGTA
TGTGATCGAAGTCCACTTGTATCATCATCATTTAGAACACCCCAGTGCGG
ATCAAGAACTTGATTTACAGTCAAGCCATCAGATGGTTCAACCGGATAAA
CATCTCCCTCTACGGTATCAGTTTCACTGAGAAGTGGTCTATGTCCTGCC
CCAACGAGGCCGTCAATAGTAGGCGTTTCATTAAGATCTGGATATGAAGC
TGCT
back to top