CX070083

Overview
NameCX070083
Unique NameCX070083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_HAEIN (Acetolactate synthase small subunit OS=Haemophilus influenzae GN=ilvH PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.595e-18
Identity = 51/153 (33.33%), Postives = 95/153 (62.09%), Query Frame = -2
Query:  191 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVA-LQRLLEPYGICEVARTGRVALVR 646
            LS+L+ +  G L+ V G+F++R +NI+SL V   +   LSR+T       +++ ++ +QL+KL+D+ +V +L+     ERE++L KV    ++R ++  +A IFR + VDV+  + T++L+G  DK+ A +  L E   + E+ R+G +++ R
Sbjct:    5 LSVLLENESGALSRVVGLFSQRAFNIESLTVAPTDDPTLSRMTIEAVGDAQALEQIEKQLHKLVDVFKVVNLSEQEHIEREIVLAKVRAVGSSRDEIKRLADIFRGQIVDVTPKSYTIQLSGTNDKVDAFISALKEETTLLEIVRSGLISVSR 157          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_ECOLI (Acetolactate synthase isozyme 3 small subunit OS=Escherichia coli (strain K12) GN=ilvH PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 4.427e-18
Identity = 55/153 (35.95%), Postives = 89/153 (58.17%), Query Frame = -2
Query:  191 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVA-LQRLLEPYGICEVARTGRVALVR 646
            LS+L+ +  G L+ V G+F++RGYNI+SL V   +   LSR+T      ++ + ++ +QL+KL+D+  V +L      ERE+ML+K+  +   R +V     IFR + +DV+    T++L G   K+ A L  + +   I EVAR+G V L R
Sbjct:    5 LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 157          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILV6_YEAST (Acetolactate synthase small subunit, mitochondrial OS=Saccharomyces cerevisiae GN=ILV6 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.686e-15
Identity = 53/205 (25.85%), Postives = 95/205 (46.34%), Query Frame = -2
Query:  191 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTA-------------------------------------------------RRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 658
            + H L+ LV + PGVL+ V+G  A RG+NI SL V + E + LSR+T V+   D  + +  +Q+  L+ ++ V D T+    +REL++ ++++  T                                                    D+ ++   F  + VD+S+ +  +EL+    ++ A  +L+EP+G+ E AR+G +AL R
Sbjct:   76 KQHVLNCLVQNEPGVLSRVSGTLAARGFNIDSLVVCNTEVKDLSRMTIVLQGQDGVVEQARRQIEDLVPVYAVLDYTNSEIIKRELVMARISLLGTEYFEDLLLHHHTSTNAGAADSQELVAEIREKQFHPANLPASEVLRLKHEHLNDITNLTNNFGGRVVDISETSCIVELSAKPTRISAFLKLVEPFGVLECARSGMMALPR 280          
BLAST of CX070083 vs. ExPASy Swiss-Prot
Match: ILVH_BUCBP (Acetolactate synthase small subunit OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ilvH PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.983e-15
Identity = 48/160 (30.00%), Postives = 90/160 (56.25%), Query Frame = -2
Query:  191 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTG---DLDKMVALQRLLEPYGICEVARTGRVALVR 661
            ++   LS+L+ +  G L+ V G+F++RGYNI+S+ V   E   +S+IT       + I ++ +QL+KLID+ +V ++      +RE+MLIK+       R V DI   FR   +  + +   ++L+G   +LD  + + + L    I E++R+G +++ +
Sbjct:    1 MKHRILSILLENESGALSRVVGLFSQRGYNIESITVAPTEDLSISKITIQTFGDKKVIEQIGKQLHKLIDVLKVTEIEDEEHFKREIMLIKINNTYDQYRKVQDITNAFRGYIISATSNISIIQLSGTNKNLDTYIEIMKKLT--NIIEISRSGIISIYK 158          
The following BLAST results are available for this feature:
BLAST of CX070083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ILVH_HAEIN2.595e-1833.33Acetolactate synthase small subunit OS=Haemophilus... [more]
ILVH_ECOLI4.427e-1835.95Acetolactate synthase isozyme 3 small subunit OS=E... [more]
ILV6_YEAST2.686e-1525.85Acetolactate synthase small subunit, mitochondrial... [more]
ILVH_BUCBP5.983e-1530.00Acetolactate synthase small subunit OS=Buchnera ap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F08-K16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070083 ID=CX070083; Name=CX070083; organism=Citrus sinensis; type=EST; length=854bp
TTTTTGGAAGTGCAACCCTTTGTGTGTGGGGGGGTGGGGTTAAAAAAACA
ATATCTCTGCTAAATTGCAAGCTACAAAATTTCCTTTCTGTGAACCGGCA
AAGCATAAATAACTAATTGATTTGCTACAAGTCTCCGAATTACAAAGGAA
ATGAATATCCACGAAGATACTTGGAATCCACGCCTGATTCACGAACCAAT
GCTACTCGACCGGTTCGTGCCACCTCGCAAATTCCATAAGGCTCTAACAG
TCTCTGCAGTGCAACCATCTTGTCCAAATCTCCTGTAAGCTCAAGAGTAA
TCGTGTGATCGGATACATCAACTGCTTTGGCCCTAAATATGGTGGCAATG
TCAAGAACATCTCTTCGAGCAGTGGTATTTACAGCAACCTTTATCAACAT
CAATTCTCGTTCAGCAAATGGCAAATGAGTAAGATCCCGAACCTCATGTA
GATCTATTAGCTTATAAAGTTGCTGCATCAACTTGCTAATTGATTCATCT
GTAGCGGGAACAACTGTTGTAATTCGTGAGAGCCCCTCAGTTTCTGCATG
TCCAACAGCCAAACTCTGAATGTTATAGCCCCTTCGAGCAAAAACCCCTG
TAACAATGTTAAGAACTCCTGGAGAGTCATTCACAAGCATGGATAAAGTA
TGTGATCGAAGTCCACTTGTATCATCATCATTTAGAACACCCCAGTGCGG
ATCAAGAACTTGATTTACAGTCAAGCCATCAGATGGTTCAACCGGATAAA
CATCTCCCTCTACGGTATCAGTTTCACTGAGAAGTGGTCTATGTCCTGCC
CCAACGAGGCCGTCAATAGTAGGCGTTTCATTAAGATCTGGATATGAAGC
TGCT
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