CX070079

Overview
NameCX070079
Unique NameCX070079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070079 vs. ExPASy Swiss-Prot
Match: MIOX_PONAB (Inositol oxygenase OS=Pongo abelii GN=MIOX PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.179e-60
Identity = 109/203 (53.69%), Postives = 140/203 (68.97%), Query Frame = -3
Query:  255 ESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVH-HKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLKW 860
            ESDPD+D P   H  QTAE IRK +PD+DW HL GL+HDLGKVL L    G PQWAVVGDTFPVGC    S+V     F++NPD  +P ++TE G+Y   CGLD V+MSWGHD+YMY V K NK +LP  A ++IR+HSFY  H    Y+ L +++D+  L W++ F+K+DLY+K     DV+K++PYY  LI+KY P  L W
Sbjct:   86 ESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGHDEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGSDYQQLCSQQDLAMLPWVQEFNKFDLYTKCPDLPDVDKLRPYYQGLIDKYCPGILSW 285          
BLAST of CX070079 vs. ExPASy Swiss-Prot
Match: MIOX_HUMAN (Inositol oxygenase OS=Homo sapiens GN=MIOX PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.054e-59
Identity = 109/203 (53.69%), Postives = 139/203 (68.47%), Query Frame = -3
Query:  255 ESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVH-HKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLKW 860
            ESDPD+D P   H  QTAE IRK +PD+DW HL GL+HDLGKVL L    G PQWAVVGDTFPVGC    S+V     F++NPD  +P ++TE G+Y   CGLD V+MSWGHD+YMY V K NK +LP  A ++IR+HSFY  H    Y+ L +++D+  L W+  F+K+DLY+K     DV+K++PYY  LI+KY P  L W
Sbjct:   86 ESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGHDEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGLIDKYCPGILSW 285          
BLAST of CX070079 vs. ExPASy Swiss-Prot
Match: MIOX_RAT (Inositol oxygenase OS=Rattus norvegicus GN=Miox PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 5.230e-59
Identity = 104/203 (51.23%), Postives = 142/203 (69.95%), Query Frame = -3
Query:  255 ESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVH-HKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLKW 860
            ESDPD+D P   H  QTAE IRK +PD+DW HL GL+HDLGK+L L    G PQWAVVGDTFPVGC    S+V     F++NPD  +P ++TE G+Y   CGL+NV+MSWGHD+Y+Y + K NK +LPS A +++R+HSFY  H    Y+ L +++D++ L W++ F+K+DLY+K     +V+ ++PYY  LI+KY P  L W
Sbjct:   86 ESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKILAL---WGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFNKFSLPSEAFYMVRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQEFNKFDLYTKCPDLPEVKSLRPYYQGLIDKYCPGILSW 285          
The following BLAST results are available for this feature:
BLAST of CX070079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MIOX_PONAB6.179e-6053.69Inositol oxygenase OS=Pongo abelii GN=MIOX PE=2 SV... [more]
MIOX_HUMAN1.054e-5953.69Inositol oxygenase OS=Homo sapiens GN=MIOX PE=1 SV... [more]
MIOX_RAT5.230e-5951.23Inositol oxygenase OS=Rattus norvegicus GN=Miox PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_14F06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F06-K12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070079 ID=CX070079; Name=CX070079; organism=Citrus sinensis; type=EST; length=862bp
CTTTTTTACAAATAGAACTCTTTTATTAGAAACAAACAGATACCAAATGC
ATCTTACACAAACCATAAAATGCAACATTATTATTTTTTCTTACAAGAAC
TTCAAACTAGATAGATTAGCCATTTAACAAAGCAACTATGATGACCTCTC
AAAAACTAATTCATCATCATATTCATTAGCTAACTTCGCTGTCTGCTGAC
CACATCAGTACCCATATTGAGCCATCGCCAGTTTCAGAAAACTCTCGAGT
CTCACCATTTTAGCTTCGCCGGGAAATACTTTTCAATGAGGGAGAGATAG
TAAGGCTTGACCTTTTCCACATCTATCCGGACTTTGCTCTTGCTATAAAG
GTCATATTTGCTGAATGTTTCAAGCCACTTCAGATTTTCTACATCCTCCT
CGTTCATTAAGTGTTTGTATGCTTCTGATTTGTGCAGCGCATAGAATGAG
TGGTATCTAATGATGAAAAGAGCTGCTGAAGGCAGAGTTGTTTTGTTTTC
CTTGGCCACCAAGTACATGTAGTCATCGTGCCCCCACGACATCATTACAT
TGTCCAATCCGCATCCTTCTGAGTAAACTCCATATTCAGTGTTGAAAGCA
GGGTTGGAGTAGTCTGGATTTTCTTTAAAATACTTGTGATGAACGATGGA
TTCATCGAAAGCACAGCCAACAGGGAAAGTGTCACCAACTACTGCCCATT
GAGGAAGCCCTCCAAAGCTAGGAAGATTTAGCACCTTACCAAGATCATGG
ATAAGGCCAGTCAAGTGAAGCCAATCTTCATCAGGATAGTCCTTTCTGAT
AGCTTCGGCAGTCTGCAGCAGGTGCTCAATTTGAGGTTCATCCAGGTCTG
GATCGCTCTCAT
back to top