CX070078
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHIL3 (50S ribosomal protein L13 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplM PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24 Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA+G V+GRLAS +A ++GK K T+ P+ DDGD IV+NA+ + TG+K +KVYYWHTGY G +KER+ ++ +E R P + KAV RM+PR R++ GS HP Sbjct: 14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINAEKVVFTGKKYSDKVYYWHTGYAGGIKERSARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCTU (50S ribosomal protein L13 OS=Mycobacterium tuberculosis GN=rplM PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24 Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = -3 Query: 272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649 W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++G KL++K+ Y H+GY G L +RT+ E M+R P + KA+L MLP+N R++ G EHP + PY Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSAQQPVPY 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCTA (50S ribosomal protein L13 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rplM PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24 Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = -3 Query: 272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649 W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++G KL++K+ Y H+GY G L +RT+ E M+R P + KA+L MLP+N R++ G EHP + PY Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSAQQPVPY 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCS5 (50S ribosomal protein L13 OS=Mycoplasma synoviae (strain 53) GN=rplM PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24 Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = -3 Query: 302 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 652 +W V DA+ QVLGRLAS VA+V++GK KPT+ PN D GD I++NA+ + +TG+K KNKVYY H+GY G LK RT ++ E PT + KA+ M+P ++ G EH Sbjct: 15 KWFVVDAENQVLGRLASLVASVLRGKTKPTFTPNADMGDNVIIINAEKVKLTGKKEKNKVYYSHSGYPGGLKARTAEKLREEKPTALLEKAISGMIPHTKLGNQQRKNLYVYAGPEH 131
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCBT (50S ribosomal protein L13 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rplM PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24 Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = -3 Query: 272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649 W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++G KL++K+ Y H+GY G L +RT+ E M+R P + KA+L MLP+N R++ G EHP + PY Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSAQQPVPY 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCBP (50S ribosomal protein L13 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rplM PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24 Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = -3 Query: 272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649 W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++G KL++K+ Y H+GY G L +RT+ E M+R P + KA+L MLP+N R++ G EHP + PY Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSAQQPVPY 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCBO (50S ribosomal protein L13 OS=Mycobacterium bovis GN=rplM PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24 Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = -3 Query: 272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649 W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++G KL++K+ Y H+GY G L +RT+ E M+R P + KA+L MLP+N R++ G EHP + PY Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSAQQPVPY 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BARHE (50S ribosomal protein L13 OS=Bartonella henselae GN=rplM PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24 Identity = 56/119 (47.06%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA+ VLGRLA+ VA ++GK K T+ P+ DDGD IV+NA I +TG+K +K YYWHTGYIG +K+RT ++ +E R P + KAV RM+PR R++ GS+HP Sbjct: 14 KWVIIDAENLVLGRLAAFVANRLRGKHKATFTPHVDDGDNVIVINADKISLTGKKYTDKKYYWHTGYIGGIKKRTARQILEGRFPERVVEKAVERMIPRGPLGRRQLKNLRVYAGSQHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_SINMW (50S ribosomal protein L13 OS=Sinorhizobium medicae (strain WSM419) GN=rplM PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24 Identity = 57/119 (47.90%), Postives = 77/119 (64.71%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA+G V+GRLAS +A ++GK K TY P+ DDGD IV+NA+ +TG+K +K YYWHTGY G +KERT ++ +E R P I KAV RM+PR R++ GS HP Sbjct: 14 KWILIDAEGLVVGRLASLIANRLRGKHKATYTPHVDDGDNVIVINAEKAVLTGKKYTDKKYYWHTGYPGGIKERTARQIIEGRFPERVIEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHOPT (50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplM PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24 Identity = 56/119 (47.06%), Postives = 77/119 (64.71%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA G V+GRLA+ VA ++GK PTY P+ D GD I++NA + +TGRK NKVYY HTG+IG +KER+ K +E R P + KA+ RM+PR R++PG+EHP Sbjct: 14 KWVIIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIINASKVVLTGRKRDNKVYYHHTGFIGGIKERSAKAILEGRFPERVVEKAIERMIPRGPLGRVQMGNLRVYPGAEHP 132 The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bpback to top |