CX070078

Overview
NameCX070078
Unique NameCX070078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHIL3 (50S ribosomal protein L13 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA+G V+GRLAS +A  ++GK K T+ P+ DDGD  IV+NA+ +  TG+K  +KVYYWHTGY G +KER+ ++ +E R P   + KAV RM+PR           R++ GS HP
Sbjct:   14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINAEKVVFTGKKYSDKVYYWHTGYAGGIKERSARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCTU (50S ribosomal protein L13 OS=Mycobacterium tuberculosis GN=rplM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = -3
Query:  272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  + ++G KL++K+ Y H+GY G L +RT+ E M+R P   + KA+L MLP+N          R++ G EHP   +   PY
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSAQQPVPY 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCTA (50S ribosomal protein L13 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rplM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = -3
Query:  272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  + ++G KL++K+ Y H+GY G L +RT+ E M+R P   + KA+L MLP+N          R++ G EHP   +   PY
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSAQQPVPY 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCS5 (50S ribosomal protein L13 OS=Mycoplasma synoviae (strain 53) GN=rplM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = -3
Query:  302 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 652
            +W V DA+ QVLGRLAS VA+V++GK KPT+ PN D GD  I++NA+ + +TG+K KNKVYY H+GY G LK RT ++  E  PT  + KA+  M+P             ++ G EH
Sbjct:   15 KWFVVDAENQVLGRLASLVASVLRGKTKPTFTPNADMGDNVIIINAEKVKLTGKKEKNKVYYSHSGYPGGLKARTAEKLREEKPTALLEKAISGMIPHTKLGNQQRKNLYVYAGPEH 131          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCBT (50S ribosomal protein L13 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rplM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = -3
Query:  272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  + ++G KL++K+ Y H+GY G L +RT+ E M+R P   + KA+L MLP+N          R++ G EHP   +   PY
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSAQQPVPY 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCBP (50S ribosomal protein L13 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rplM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = -3
Query:  272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  + ++G KL++K+ Y H+GY G L +RT+ E M+R P   + KA+L MLP+N          R++ G EHP   +   PY
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSAQQPVPY 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCBO (50S ribosomal protein L13 OS=Mycobacterium bovis GN=rplM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = -3
Query:  272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  + ++G KL++K+ Y H+GY G L +RT+ E M+R P   + KA+L MLP+N          R++ G EHP   +   PY
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMVYRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSAQQPVPY 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BARHE (50S ribosomal protein L13 OS=Bartonella henselae GN=rplM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24
Identity = 56/119 (47.06%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA+  VLGRLA+ VA  ++GK K T+ P+ DDGD  IV+NA  I +TG+K  +K YYWHTGYIG +K+RT ++ +E R P   + KAV RM+PR           R++ GS+HP
Sbjct:   14 KWVIIDAENLVLGRLAAFVANRLRGKHKATFTPHVDDGDNVIVINADKISLTGKKYTDKKYYWHTGYIGGIKKRTARQILEGRFPERVVEKAVERMIPRGPLGRRQLKNLRVYAGSQHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_SINMW (50S ribosomal protein L13 OS=Sinorhizobium medicae (strain WSM419) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24
Identity = 57/119 (47.90%), Postives = 77/119 (64.71%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA+G V+GRLAS +A  ++GK K TY P+ DDGD  IV+NA+   +TG+K  +K YYWHTGY G +KERT ++ +E R P   I KAV RM+PR           R++ GS HP
Sbjct:   14 KWILIDAEGLVVGRLASLIANRLRGKHKATYTPHVDDGDNVIVINAEKAVLTGKKYTDKKYYWHTGYPGGIKERTARQIIEGRFPERVIEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHOPT (50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24
Identity = 56/119 (47.06%), Postives = 77/119 (64.71%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA G V+GRLA+ VA  ++GK  PTY P+ D GD  I++NA  + +TGRK  NKVYY HTG+IG +KER+ K  +E R P   + KA+ RM+PR           R++PG+EHP
Sbjct:   14 KWVIIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIINASKVVLTGRKRDNKVYYHHTGFIGGIKERSAKAILEGRFPERVVEKAIERMIPRGPLGRVQMGNLRVYPGAEHP 132          
The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_RHIL31.653e-2446.2250S ribosomal protein L13 OS=Rhizobium leguminosar... [more]
RL13_MYCTU1.653e-2444.4450S ribosomal protein L13 OS=Mycobacterium tubercu... [more]
RL13_MYCTA1.653e-2444.4450S ribosomal protein L13 OS=Mycobacterium tubercu... [more]
RL13_MYCS51.653e-2447.0150S ribosomal protein L13 OS=Mycoplasma synoviae (... [more]
RL13_MYCBT1.653e-2444.4450S ribosomal protein L13 OS=Mycobacterium bovis (... [more]
RL13_MYCBP1.653e-2444.4450S ribosomal protein L13 OS=Mycobacterium bovis (... [more]
RL13_MYCBO1.653e-2444.4450S ribosomal protein L13 OS=Mycobacterium bovis G... [more]
RL13_BARHE1.653e-2447.0650S ribosomal protein L13 OS=Bartonella henselae G... [more]
RL13_SINMW2.158e-2447.9050S ribosomal protein L13 OS=Sinorhizobium medicae... [more]
RL13_RHOPT2.158e-2447.0650S ribosomal protein L13 OS=Rhodopseudomonas palu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F05-K10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bp
TTTTCAAAACCAAAGAATATGCTAGACTGCCATTCCAACATGTAACAGAC
AATGCCCGGATTGTTTGGGTTACATACAGAAAACGAGTATTCCCTATCAA
AGCAAATAGAGCCCCAACAGATCTTCAGGCAGTCACTTCTGCTTCAACTT
CTTTCTTTCTGTTTTTCCTCATATCCTTGTTACTCTGCTGCATCTCAGCC
TTTTTCTGTTCTCTAATCATGGCTCTTCTAACACGAGGTCGCAGTTCTCT
AACACGTCGAGGAGGCATCACGTATGGTTCAAGGGGCCGGTCGCCAAAAG
GGTGCTCGCTTCCAGGAAAAATCCTCAGTTTTCGATCTCTATCATCACGT
AATTTATTTCTTGGAAGCATGCGTAAGACAGCTTTACGAATGGCTTCTGT
AGGGTCCCTCTCCATCTGTTCTTTTAAGGTCCTTTCCTTGAGGTGGCCTA
TATACCCGGTATGCCAGTAGTAAACCTTATTTTTAAGTTTCCTCCCAGTA
ACACATATATCTTTTGCATTAAGCACAATGCACATATCACCATCATCACG
ATTAGGAGCGTACGTAGGCTTATCCTTGCCTTGAACGACAGTAGCTACCT
GAGATGCTAATCTCCCAAGGACCTGGCCTTTAGCATCAAAAACTCTCCAT
CGTAGACCTTCTAGATTGATTCGCCTCAGCCCAGCAAGCGCTTTCTTCAT
GTTGCCACTGAAAGCTGTGGCTGCTTGGTTTGCCATTTTTCTATTGCTCT
GTTATAACTTCTTTTAAACAAAAATGAGTAACGCAAATCAAATTC
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