CX070078

Overview
NameCX070078
Unique NameCX070078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070078_ssr149 microsatellite CX070078_ssr149:149..160. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10629 contig Csv1_Contig10629:228..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHOPS (50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24
Identity = 59/127 (46.46%), Postives = 79/127 (62.20%), Query Frame = -3
Query:  275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652
            +W + DA G V+GRLA+ VA  ++GK  PTY P+ D GD  I++NA  + +TGRK  NKVYY HTG+IG +KERT K  +E R P   + KAV RM+PR           R++ G+EHP   +  EP
Sbjct:   14 KWVIIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNIIIINAAKVVLTGRKRDNKVYYHHTGFIGGIKERTAKSILEGRFPERVVEKAVERMIPRGPLGRVQMGNLRVYGGAEHPHEAQQPEP 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHOPA (50S ribosomal protein L13 OS=Rhodopseudomonas palustris GN=rplM PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24
Identity = 56/119 (47.06%), Postives = 77/119 (64.71%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA G V+GRLA+ VA  ++GK  PTY P+ D GD  I++NA  + +TGRK  NKVYY HTG+IG +KER+ K  +E R P   + KA+ RM+PR           R++PG+EHP
Sbjct:   14 KWVIIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIINASKVVLTGRKRDNKVYYHHTGFIGGIKERSAKAILEGRFPERVVEKAIERMIPRGPLGRVQMGNLRVYPGAEHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHIME (50S ribosomal protein L13 OS=Rhizobium meliloti GN=rplM PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24
Identity = 57/119 (47.90%), Postives = 77/119 (64.71%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA+G V+GRLAS +A  ++GK K TY P+ DDGD  IV+NA+   +TG+K  +K YYWHTGY G +KERT ++ +E R P   I KAV RM+PR           R++ GS HP
Sbjct:   14 KWILIDAEGLVVGRLASLIANRLRGKHKATYTPHVDDGDNVIVINAEKAVLTGKKYTDKKYYWHTGYPGGIKERTARQIIEGRFPERVIEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHILW (50S ribosomal protein L13 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.819e-24
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA+G V+GRLAS +A  ++GK K T+ P+ DDGD  IV+NA  +  TG+K  +KVYYWHTG+ G +KERT ++ +E R P   + KAV RM+PR           R++ GS HP
Sbjct:   14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKVVFTGKKYSDKVYYWHTGFAGGIKERTARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCA9 (50S ribosomal protein L13 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.819e-24
Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = -3
Query:  272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649
            W V DA   VLGRLA Q A +++GK KPT+AP+ D GD  I++NA+ I ++G KL NK  Y H+G+ G L +R++ EQ+E+ PT  + KA++ MLP+N          +++ G+EHP   +   P+
Sbjct:   15 WYVIDATDVVLGRLAVQAANLLRGKHKPTFAPHVDGGDFVIIINAEKIALSGNKLTNKFAYRHSGFPGGLSKRSIGEQLEKFPTRTVEKAIVGMLPKNKLGRQIERKLKVYAGAEHPHAAQQPIPF 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THEPX (50S ribosomal protein L13 OS=Thermoanaerobacter sp. (strain X514) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24
Identity = 57/117 (48.72%), Postives = 76/117 (64.96%), Query Frame = -3
Query:  302 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 652
            +W V DA+G+VLGRLASQ+A ++ GK KPTY P+ D GD  IVLNA+ I +TG KL++K Y ++TGY G LKE   K+ M+  P   I  AV  MLP+N          +++ GSEH
Sbjct:   14 KWFVIDAEGKVLGRLASQIAKILMGKHKPTYTPHVDTGDFVIVLNAEKIVLTGNKLEDKYYKYYTGYPGGLKEVQYKKLMQTKPEFVIYHAVKGMLPKNRLGRRMIKRLKVYRGSEH 130          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THEP3 (50S ribosomal protein L13 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24
Identity = 57/117 (48.72%), Postives = 76/117 (64.96%), Query Frame = -3
Query:  302 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 652
            +W V DA+G+VLGRLASQ+A ++ GK KPTY P+ D GD  IVLNA+ I +TG KL++K Y ++TGY G LKE   K+ M+  P   I  AV  MLP+N          +++ GSEH
Sbjct:   14 KWFVIDAEGKVLGRLASQIAKILMGKHKPTYTPHVDTGDFVIVLNAEKIVLTGNKLEDKYYKYYTGYPGGLKEVQYKKLMQTKPEFVIYHAVKGMLPKNRLGRRMIKRLKVYRGSEH 130          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_SYNAS (50S ribosomal protein L13 OS=Syntrophus aciditrophicus (strain SB) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24
Identity = 50/116 (43.10%), Postives = 79/116 (68.10%), Query Frame = -3
Query:  302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649
            W + DA+GQVLGR+AS++A  ++GK KP Y P+ D GD  +V+NA+ + +TG+KL++K+YY H+GY G LKE+T  + M+  PT+ +  AV  MLP+N          +++ G++H
Sbjct:   15 WYLIDAEGQVLGRMASEIARRLRGKHKPEYTPHVDTGDFIVVVNAEKMVLTGKKLRDKIYYHHSGYPGGLKEKTAGKMMQEKPTDVLWLAVKGMLPKNSLGRRMLRKLKVYAGNDH 130          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHIEC (50S ribosomal protein L13 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA+G V+GRLAS +A  ++GK K T+ P+ DDGD  IV+NA  +  TG+K  +KVYYWHTGY G +KERT ++ +E R P   + KAV RM+PR           R++ G  HP
Sbjct:   14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKVVFTGKKYSDKVYYWHTGYAGGIKERTARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGPNHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BARQU (50S ribosomal protein L13 OS=Bartonella quintana GN=rplM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA+  VLGRLA+ VA  ++GK K T+ P+ DDGD  IV+NA  I +TG+K  +K YYWHTGYIG +KERT ++ +E R P   + KAV RM+PR            ++ GS++P
Sbjct:   14 KWVIIDAENLVLGRLAAFVANRLRGKHKATFTPHVDDGDNVIVINADKIVLTGKKYTDKKYYWHTGYIGGIKERTARQILEGRFPERVVEKAVERMIPRGPLGRRQLRNLHVYAGSQNP 132          
The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_RHOPS2.158e-2446.4650S ribosomal protein L13 OS=Rhodopseudomonas palu... [more]
RL13_RHOPA2.158e-2447.0650S ribosomal protein L13 OS=Rhodopseudomonas palu... [more]
RL13_RHIME2.158e-2447.9050S ribosomal protein L13 OS=Rhizobium meliloti GN... [more]
RL13_RHILW2.819e-2446.2250S ribosomal protein L13 OS=Rhizobium leguminosar... [more]
RL13_MYCA92.819e-2442.0650S ribosomal protein L13 OS=Mycobacterium abscess... [more]
RL13_THEPX3.682e-2448.7250S ribosomal protein L13 OS=Thermoanaerobacter sp... [more]
RL13_THEP33.682e-2448.7250S ribosomal protein L13 OS=Thermoanaerobacter ps... [more]
RL13_SYNAS3.682e-2443.1050S ribosomal protein L13 OS=Syntrophus aciditroph... [more]
RL13_RHIEC3.682e-2446.2250S ribosomal protein L13 OS=Rhizobium etli (strai... [more]
RL13_BARQU3.682e-2446.2250S ribosomal protein L13 OS=Bartonella quintana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F05-K10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bp
TTTTCAAAACCAAAGAATATGCTAGACTGCCATTCCAACATGTAACAGAC
AATGCCCGGATTGTTTGGGTTACATACAGAAAACGAGTATTCCCTATCAA
AGCAAATAGAGCCCCAACAGATCTTCAGGCAGTCACTTCTGCTTCAACTT
CTTTCTTTCTGTTTTTCCTCATATCCTTGTTACTCTGCTGCATCTCAGCC
TTTTTCTGTTCTCTAATCATGGCTCTTCTAACACGAGGTCGCAGTTCTCT
AACACGTCGAGGAGGCATCACGTATGGTTCAAGGGGCCGGTCGCCAAAAG
GGTGCTCGCTTCCAGGAAAAATCCTCAGTTTTCGATCTCTATCATCACGT
AATTTATTTCTTGGAAGCATGCGTAAGACAGCTTTACGAATGGCTTCTGT
AGGGTCCCTCTCCATCTGTTCTTTTAAGGTCCTTTCCTTGAGGTGGCCTA
TATACCCGGTATGCCAGTAGTAAACCTTATTTTTAAGTTTCCTCCCAGTA
ACACATATATCTTTTGCATTAAGCACAATGCACATATCACCATCATCACG
ATTAGGAGCGTACGTAGGCTTATCCTTGCCTTGAACGACAGTAGCTACCT
GAGATGCTAATCTCCCAAGGACCTGGCCTTTAGCATCAAAAACTCTCCAT
CGTAGACCTTCTAGATTGATTCGCCTCAGCCCAGCAAGCGCTTTCTTCAT
GTTGCCACTGAAAGCTGTGGCTGCTTGGTTTGCCATTTTTCTATTGCTCT
GTTATAACTTCTTTTAAACAAAAATGAGTAACGCAAATCAAATTC
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