CX070078
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHOPS (50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplM PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24 Identity = 59/127 (46.46%), Postives = 79/127 (62.20%), Query Frame = -3 Query: 275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652 +W + DA G V+GRLA+ VA ++GK PTY P+ D GD I++NA + +TGRK NKVYY HTG+IG +KERT K +E R P + KAV RM+PR R++ G+EHP + EP Sbjct: 14 KWVIIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNIIIINAAKVVLTGRKRDNKVYYHHTGFIGGIKERTAKSILEGRFPERVVEKAVERMIPRGPLGRVQMGNLRVYGGAEHPHEAQQPEP 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHOPA (50S ribosomal protein L13 OS=Rhodopseudomonas palustris GN=rplM PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24 Identity = 56/119 (47.06%), Postives = 77/119 (64.71%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA G V+GRLA+ VA ++GK PTY P+ D GD I++NA + +TGRK NKVYY HTG+IG +KER+ K +E R P + KA+ RM+PR R++PG+EHP Sbjct: 14 KWVIIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIINASKVVLTGRKRDNKVYYHHTGFIGGIKERSAKAILEGRFPERVVEKAIERMIPRGPLGRVQMGNLRVYPGAEHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHIME (50S ribosomal protein L13 OS=Rhizobium meliloti GN=rplM PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.158e-24 Identity = 57/119 (47.90%), Postives = 77/119 (64.71%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA+G V+GRLAS +A ++GK K TY P+ DDGD IV+NA+ +TG+K +K YYWHTGY G +KERT ++ +E R P I KAV RM+PR R++ GS HP Sbjct: 14 KWILIDAEGLVVGRLASLIANRLRGKHKATYTPHVDDGDNVIVINAEKAVLTGKKYTDKKYYWHTGYPGGIKERTARQIIEGRFPERVIEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHILW (50S ribosomal protein L13 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplM PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.819e-24 Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA+G V+GRLAS +A ++GK K T+ P+ DDGD IV+NA + TG+K +KVYYWHTG+ G +KERT ++ +E R P + KAV RM+PR R++ GS HP Sbjct: 14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKVVFTGKKYSDKVYYWHTGFAGGIKERTARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCA9 (50S ribosomal protein L13 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=rplM PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.819e-24 Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = -3 Query: 272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649 W V DA VLGRLA Q A +++GK KPT+AP+ D GD I++NA+ I ++G KL NK Y H+G+ G L +R++ EQ+E+ PT + KA++ MLP+N +++ G+EHP + P+ Sbjct: 15 WYVIDATDVVLGRLAVQAANLLRGKHKPTFAPHVDGGDFVIIINAEKIALSGNKLTNKFAYRHSGFPGGLSKRSIGEQLEKFPTRTVEKAIVGMLPKNKLGRQIERKLKVYAGAEHPHAAQQPIPF 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THEPX (50S ribosomal protein L13 OS=Thermoanaerobacter sp. (strain X514) GN=rplM PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24 Identity = 57/117 (48.72%), Postives = 76/117 (64.96%), Query Frame = -3 Query: 302 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 652 +W V DA+G+VLGRLASQ+A ++ GK KPTY P+ D GD IVLNA+ I +TG KL++K Y ++TGY G LKE K+ M+ P I AV MLP+N +++ GSEH Sbjct: 14 KWFVIDAEGKVLGRLASQIAKILMGKHKPTYTPHVDTGDFVIVLNAEKIVLTGNKLEDKYYKYYTGYPGGLKEVQYKKLMQTKPEFVIYHAVKGMLPKNRLGRRMIKRLKVYRGSEH 130
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THEP3 (50S ribosomal protein L13 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplM PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24 Identity = 57/117 (48.72%), Postives = 76/117 (64.96%), Query Frame = -3 Query: 302 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 652 +W V DA+G+VLGRLASQ+A ++ GK KPTY P+ D GD IVLNA+ I +TG KL++K Y ++TGY G LKE K+ M+ P I AV MLP+N +++ GSEH Sbjct: 14 KWFVIDAEGKVLGRLASQIAKILMGKHKPTYTPHVDTGDFVIVLNAEKIVLTGNKLEDKYYKYYTGYPGGLKEVQYKKLMQTKPEFVIYHAVKGMLPKNRLGRRMIKRLKVYRGSEH 130
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_SYNAS (50S ribosomal protein L13 OS=Syntrophus aciditrophicus (strain SB) GN=rplM PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24 Identity = 50/116 (43.10%), Postives = 79/116 (68.10%), Query Frame = -3 Query: 302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649 W + DA+GQVLGR+AS++A ++GK KP Y P+ D GD +V+NA+ + +TG+KL++K+YY H+GY G LKE+T + M+ PT+ + AV MLP+N +++ G++H Sbjct: 15 WYLIDAEGQVLGRMASEIARRLRGKHKPEYTPHVDTGDFIVVVNAEKMVLTGKKLRDKIYYHHSGYPGGLKEKTAGKMMQEKPTDVLWLAVKGMLPKNSLGRRMLRKLKVYAGNDH 130
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHIEC (50S ribosomal protein L13 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplM PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24 Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA+G V+GRLAS +A ++GK K T+ P+ DDGD IV+NA + TG+K +KVYYWHTGY G +KERT ++ +E R P + KAV RM+PR R++ G HP Sbjct: 14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKVVFTGKKYSDKVYYWHTGYAGGIKERTARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGPNHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BARQU (50S ribosomal protein L13 OS=Bartonella quintana GN=rplM PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24 Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA+ VLGRLA+ VA ++GK K T+ P+ DDGD IV+NA I +TG+K +K YYWHTGYIG +KERT ++ +E R P + KAV RM+PR ++ GS++P Sbjct: 14 KWVIIDAENLVLGRLAAFVANRLRGKHKATFTPHVDDGDNVIVINADKIVLTGKKYTDKKYYWHTGYIGGIKERTARQILEGRFPERVVEKAVERMIPRGPLGRRQLRNLHVYAGSQNP 132 The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bpback to top |