CX070078
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_AGRT5 (50S ribosomal protein L13 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplM PE=3 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24 Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA+G V+GRLA+ VAT ++GK K T+ P+ DDGD IV+NA+ + TG+K +K YYWHTG+ G +KERT ++ +E R P + KA+ RM+PR R++ GS HP Sbjct: 14 KWIIIDAEGLVVGRLATIVATRLRGKHKATFTPHVDDGDNVIVINAEKVAFTGKKYSDKKYYWHTGHPGGIKERTARQIIEGRFPERVVEKAIERMIPRGPLGRRQMKNLRVYAGSNHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THISH (50S ribosomal protein L13 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplM PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.809e-24 Identity = 52/116 (44.83%), Postives = 74/116 (63.79%), Query Frame = -3 Query: 302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649 W + DA G+ LGRLAS+VA ++GK KP Y P+ D GD +++NA + V+G+K ++K+YY HTGYIGH+K + MER P AI AV MLP+N +++ G+EH Sbjct: 15 WYLVDASGKTLGRLASEVARRLRGKHKPEYTPHVDTGDYIVIINADKVRVSGKKAQDKMYYHHTGYIGHMKSMNFNQLMERAPERAIEFAVKGMLPKNPLGRAMFKKLKVYAGTEH 130
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHOPB (50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplM PE=3 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 4.809e-24 Identity = 58/127 (45.67%), Postives = 79/127 (62.20%), Query Frame = -3 Query: 275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652 +W V DA G V+GRLA+ VA ++GK PTY P+ D GD I++NA + +TGRK +NKVYY HTG+IG +KERT K +E R P + KA+ RM+PR R++ G +HP + EP Sbjct: 14 KWIVIDATGLVVGRLATLVANRLRGKHLPTYTPHVDCGDHVIIVNAAKVVLTGRKRENKVYYHHTGFIGGIKERTAKSILEGRFPERVVEKAIERMIPRGPLGRMQMGNLRVYGGPDHPHEAQQPEP 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_GEMAT (50S ribosomal protein L13 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rplM PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.809e-24 Identity = 56/119 (47.06%), Postives = 72/119 (60.50%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN-XXXXXXXXXXRIFPGSEHP 652 RW V DA+G VLGRLAS+VA +++GK KP Y P+ D GD IV+NA + VTGRK + K Y+ HTGY+GH K + + P I KAV MLP+ R+F G+EHP Sbjct: 14 RWYVVDAEGMVLGRLASEVAKIIRGKHKPMYTPHMDTGDFVIVINASKVQVTGRKAEQKTYFSHTGYMGHEKHTPFASVLAKHPERVIEKAVYGMLPKTALGRQVLRRKLRVFAGAEHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MANSM (50S ribosomal protein L13 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplM PE=3 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24 Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = -3 Query: 302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649 W V DA G+ LGRLA+++A+ ++GK K Y P+ D GD IV+NA + VTGRK +KVYYWHTGY+G +K+ T KE + R P I AV MLP+ +++ GS+H Sbjct: 15 WYVVDATGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKVYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGSQH 130
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BACHK (50S ribosomal protein L13 OS=Bacillus thuringiensis subsp. konkukian GN=rplM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24 Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = -3 Query: 272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652 +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD I++NA+ I +TG KL +K+YY HT + G LK+RT E P + + A+ MLP+ ++ G+EHP + E Y Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BACCR (50S ribosomal protein L13 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24 Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = -3 Query: 272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652 +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD I++NA+ I +TG KL +K+YY HT + G LK+RT E P + + A+ MLP+ ++ G+EHP + E Y Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BACCQ (50S ribosomal protein L13 OS=Bacillus cereus (strain Q1) GN=rplM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24 Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = -3 Query: 272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652 +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD I++NA+ I +TG KL +K+YY HT + G LK+RT E P + + A+ MLP+ ++ G+EHP + E Y Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BACC7 (50S ribosomal protein L13 OS=Bacillus cereus (strain AH187) GN=rplM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24 Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = -3 Query: 272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652 +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD I++NA+ I +TG KL +K+YY HT + G LK+RT E P + + A+ MLP+ ++ G+EHP + E Y Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BACC4 (50S ribosomal protein L13 OS=Bacillus cereus (strain B4264) GN=rplM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24 Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = -3 Query: 272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652 +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD I++NA+ I +TG KL +K+YY HT + G LK+RT E P + + A+ MLP+ ++ G+EHP + E Y Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141 The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bpback to top |