CX070078

Overview
NameCX070078
Unique NameCX070078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_AGRT5 (50S ribosomal protein L13 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplM PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.682e-24
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA+G V+GRLA+ VAT ++GK K T+ P+ DDGD  IV+NA+ +  TG+K  +K YYWHTG+ G +KERT ++ +E R P   + KA+ RM+PR           R++ GS HP
Sbjct:   14 KWIIIDAEGLVVGRLATIVATRLRGKHKATFTPHVDDGDNVIVINAEKVAFTGKKYSDKKYYWHTGHPGGIKERTARQIIEGRFPERVVEKAIERMIPRGPLGRRQMKNLRVYAGSNHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THISH (50S ribosomal protein L13 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.809e-24
Identity = 52/116 (44.83%), Postives = 74/116 (63.79%), Query Frame = -3
Query:  302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649
            W + DA G+ LGRLAS+VA  ++GK KP Y P+ D GD  +++NA  + V+G+K ++K+YY HTGYIGH+K     + MER P  AI  AV  MLP+N          +++ G+EH
Sbjct:   15 WYLVDASGKTLGRLASEVARRLRGKHKPEYTPHVDTGDYIVIINADKVRVSGKKAQDKMYYHHTGYIGHMKSMNFNQLMERAPERAIEFAVKGMLPKNPLGRAMFKKLKVYAGTEH 130          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHOPB (50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplM PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.809e-24
Identity = 58/127 (45.67%), Postives = 79/127 (62.20%), Query Frame = -3
Query:  275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652
            +W V DA G V+GRLA+ VA  ++GK  PTY P+ D GD  I++NA  + +TGRK +NKVYY HTG+IG +KERT K  +E R P   + KA+ RM+PR           R++ G +HP   +  EP
Sbjct:   14 KWIVIDATGLVVGRLATLVANRLRGKHLPTYTPHVDCGDHVIIVNAAKVVLTGRKRENKVYYHHTGFIGGIKERTAKSILEGRFPERVVEKAIERMIPRGPLGRMQMGNLRVYGGPDHPHEAQQPEP 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_GEMAT (50S ribosomal protein L13 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.809e-24
Identity = 56/119 (47.06%), Postives = 72/119 (60.50%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN-XXXXXXXXXXRIFPGSEHP 652
            RW V DA+G VLGRLAS+VA +++GK KP Y P+ D GD  IV+NA  + VTGRK + K Y+ HTGY+GH K       + + P   I KAV  MLP+            R+F G+EHP
Sbjct:   14 RWYVVDAEGMVLGRLASEVAKIIRGKHKPMYTPHMDTGDFVIVINASKVQVTGRKAEQKTYFSHTGYMGHEKHTPFASVLAKHPERVIEKAVYGMLPKTALGRQVLRRKLRVFAGAEHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MANSM (50S ribosomal protein L13 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplM PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = -3
Query:  302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649
            W V DA G+ LGRLA+++A+ ++GK K  Y P+ D GD  IV+NA  + VTGRK  +KVYYWHTGY+G +K+ T KE + R P   I  AV  MLP+           +++ GS+H
Sbjct:   15 WYVVDATGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKVYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGSQH 130          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BACHK (50S ribosomal protein L13 OS=Bacillus thuringiensis subsp. konkukian GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = -3
Query:  272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BACCR (50S ribosomal protein L13 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = -3
Query:  272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BACCQ (50S ribosomal protein L13 OS=Bacillus cereus (strain Q1) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = -3
Query:  272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BACC7 (50S ribosomal protein L13 OS=Bacillus cereus (strain AH187) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = -3
Query:  272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BACC4 (50S ribosomal protein L13 OS=Bacillus cereus (strain B4264) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = -3
Query:  272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_AGRT53.682e-2445.3850S ribosomal protein L13 OS=Agrobacterium tumefac... [more]
RL13_THISH4.809e-2444.8350S ribosomal protein L13 OS=Thioalkalivibrio sp. ... [more]
RL13_RHOPB4.809e-2445.6750S ribosomal protein L13 OS=Rhodopseudomonas palu... [more]
RL13_GEMAT4.809e-2447.0650S ribosomal protein L13 OS=Gemmatimonas aurantia... [more]
RL13_MANSM6.280e-2445.6950S ribosomal protein L13 OS=Mannheimia succinicip... [more]
RL13_BACHK6.280e-2441.7350S ribosomal protein L13 OS=Bacillus thuringiensi... [more]
RL13_BACCR6.280e-2441.7350S ribosomal protein L13 OS=Bacillus cereus (stra... [more]
RL13_BACCQ6.280e-2441.7350S ribosomal protein L13 OS=Bacillus cereus (stra... [more]
RL13_BACC76.280e-2441.7350S ribosomal protein L13 OS=Bacillus cereus (stra... [more]
RL13_BACC46.280e-2441.7350S ribosomal protein L13 OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F05-K10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bp
TTTTCAAAACCAAAGAATATGCTAGACTGCCATTCCAACATGTAACAGAC
AATGCCCGGATTGTTTGGGTTACATACAGAAAACGAGTATTCCCTATCAA
AGCAAATAGAGCCCCAACAGATCTTCAGGCAGTCACTTCTGCTTCAACTT
CTTTCTTTCTGTTTTTCCTCATATCCTTGTTACTCTGCTGCATCTCAGCC
TTTTTCTGTTCTCTAATCATGGCTCTTCTAACACGAGGTCGCAGTTCTCT
AACACGTCGAGGAGGCATCACGTATGGTTCAAGGGGCCGGTCGCCAAAAG
GGTGCTCGCTTCCAGGAAAAATCCTCAGTTTTCGATCTCTATCATCACGT
AATTTATTTCTTGGAAGCATGCGTAAGACAGCTTTACGAATGGCTTCTGT
AGGGTCCCTCTCCATCTGTTCTTTTAAGGTCCTTTCCTTGAGGTGGCCTA
TATACCCGGTATGCCAGTAGTAAACCTTATTTTTAAGTTTCCTCCCAGTA
ACACATATATCTTTTGCATTAAGCACAATGCACATATCACCATCATCACG
ATTAGGAGCGTACGTAGGCTTATCCTTGCCTTGAACGACAGTAGCTACCT
GAGATGCTAATCTCCCAAGGACCTGGCCTTTAGCATCAAAAACTCTCCAT
CGTAGACCTTCTAGATTGATTCGCCTCAGCCCAGCAAGCGCTTTCTTCAT
GTTGCCACTGAAAGCTGTGGCTGCTTGGTTTGCCATTTTTCTATTGCTCT
GTTATAACTTCTTTTAAACAAAAATGAGTAACGCAAATCAAATTC
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