CX070078

Overview
NameCX070078
Unique NameCX070078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BURTA (50S ribosomal protein L13 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rplM PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.566e-19
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = -3 
Query:  299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649
            W V DA  +VLGR+AS+VA  ++GK KP + P+ D GD  IV+NA  + VTG K  +K YY H+GY G + E T  +  ER P  A+ KAV  MLP+           +++  + HP
Sbjct:   15 WYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDFIIVINASKLKVTGNKTLDKKYYRHSGYPGGIYETTFGKMQERFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEATHP 131
[Close]
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BURPS (50S ribosomal protein L13 OS=Burkholderia pseudomallei GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.566e-19
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = -3 
Query:  299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649
            W V DA  +VLGR+AS+VA  ++GK KP + P+ D GD  IV+NA  + VTG K  +K YY H+GY G + E T  +  ER P  A+ KAV  MLP+           +++  + HP
Sbjct:   15 WYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDFIIVINASKLKVTGNKTLDKKYYRHSGYPGGIYETTFGKMQERFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEATHP 131
[Close]
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BURP6 (50S ribosomal protein L13 OS=Burkholderia pseudomallei (strain 668) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.566e-19
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = -3 
Query:  299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649
            W V DA  +VLGR+AS+VA  ++GK KP + P+ D GD  IV+NA  + VTG K  +K YY H+GY G + E T  +  ER P  A+ KAV  MLP+           +++  + HP
Sbjct:   15 WYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDFIIVINASKLKVTGNKTLDKKYYRHSGYPGGIYETTFGKMQERFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEATHP 131
[Close]
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BURP1 (50S ribosomal protein L13 OS=Burkholderia pseudomallei (strain 1710b) GN=rplM PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.566e-19
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = -3 
Query:  299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649
            W V DA  +VLGR+AS+VA  ++GK KP + P+ D GD  IV+NA  + VTG K  +K YY H+GY G + E T  +  ER P  A+ KAV  MLP+           +++  + HP
Sbjct:   15 WYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDFIIVINASKLKVTGNKTLDKKYYRHSGYPGGIYETTFGKMQERFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEATHP 131
[Close]
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BURP0 (50S ribosomal protein L13 OS=Burkholderia pseudomallei (strain 1106a) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.566e-19
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = -3 
Query:  299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649
            W V DA  +VLGR+AS+VA  ++GK KP + P+ D GD  IV+NA  + VTG K  +K YY H+GY G + E T  +  ER P  A+ KAV  MLP+           +++  + HP
Sbjct:   15 WYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDFIIVINASKLKVTGNKTLDKKYYRHSGYPGGIYETTFGKMQERFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEATHP 131
[Close]
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_WOLTR (50S ribosomal protein L13 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 50/118 (42.37%), Postives = 70/118 (59.32%), Query Frame = -3 
Query:  302 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 652
            +W V +A+G V+GRLA+ VAT+++GK KP Y P+ D GD  I++NA+ +  TG+K K KVYY HTGY G LK+ T    +  + P   I+ AV RML              ++ G EH
Sbjct:   14 KWFVINAEGLVVGRLAAFVATLLRGKHKPEYTPHMDCGDNIIIINAEKVHFTGKKFKEKVYYKHTGYPGGLKKTTPNNVLNGKFPERVIKMAVKRMLDDGPMARKRFGNLYVYSGPEH 131
[Close]
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THET8 (50S ribosomal protein L13 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplM PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = -3 
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            RW + DA+G+ LGRLA+++AT+++GK +P + PN   GD  +V+NA  I VTG+KL+ K+Y  ++GY G LK+  L++ +   P   +  AV  MLP+           +++ G +HP
Sbjct:   12 RWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHP 129
[Close]
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THET2 (50S ribosomal protein L13 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplM PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = -3 
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            RW + DA+G+ LGRLA+++AT+++GK +P + PN   GD  +V+NA  I VTG+KL+ K+Y  ++GY G LK+  L++ +   P   +  AV  MLP+           +++ G +HP
Sbjct:   12 RWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHP 129
[Close]
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THEEB (50S ribosomal protein L13 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 48/126 (38.10%), Postives = 71/126 (56.35%), Query Frame = -3 
Query:  275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652
            +W V DA  Q LGRLA+++A +++GK+K  Y P+ D GD  IV+NA+ + VTG+K   K+Y  H+G  G +K  T  +   R P   I  AV  MLP+N          +++ G EHP   +  +P
Sbjct:   18 QWYVIDAADQRLGRLAAEIARILRGKNKAIYTPHMDTGDFVIVINAEKVTVTGKKRSQKLYRRHSGRPGGMKIETFDQLQARIPERIIEHAVKGMLPKNSLGRKLFTKLKVYAGPEHPHQAQKPQP 143
[Close]
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_STAEQ (50S ribosomal protein L13 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 47/127 (37.01%), Postives = 72/127 (56.69%), Query Frame = -3 
Query:  272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652
            +W V DA+GQ LGRL+S+VA +++GK+K TY P+ D GD  I++NA  I  TG K ++K+YY H+ + G LK  +  E    +P   +  ++  MLP             ++ G+EHP   +  E Y
Sbjct:   15 KWYVIDAEGQTLGRLSSEVAAILRGKNKVTYTPHVDTGDYVIIINASKIEFTGNKEQDKMYYRHSNHPGGLKSISAGELKRTNPERLLETSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENY 141
The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_BURTA3.566e-1941.8850S ribosomal protein L13 OS=Burkholderia thailand... [more]
RL13_BURPS3.566e-1941.8850S ribosomal protein L13 OS=Burkholderia pseudoma... [more]
RL13_BURP63.566e-1941.8850S ribosomal protein L13 OS=Burkholderia pseudoma... [more]
RL13_BURP13.566e-1941.8850S ribosomal protein L13 OS=Burkholderia pseudoma... [more]
RL13_BURP03.566e-1941.8850S ribosomal protein L13 OS=Burkholderia pseudoma... [more]
RL13_WOLTR4.657e-1942.3750S ribosomal protein L13 OS=Wolbachia sp. subsp. ... [more]
RL13_THET84.657e-1938.1450S ribosomal protein L13 OS=Thermus thermophilus ... [more]
RL13_THET24.657e-1938.1450S ribosomal protein L13 OS=Thermus thermophilus ... [more]
RL13_THEEB4.657e-1938.1050S ribosomal protein L13 OS=Thermosynechococcus e... [more]
RL13_STAEQ4.657e-1937.0150S ribosomal protein L13 OS=Staphylococcus epider... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F05-K10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bp
TTTTCAAAACCAAAGAATATGCTAGACTGCCATTCCAACATGTAACAGAC
AATGCCCGGATTGTTTGGGTTACATACAGAAAACGAGTATTCCCTATCAA
AGCAAATAGAGCCCCAACAGATCTTCAGGCAGTCACTTCTGCTTCAACTT
CTTTCTTTCTGTTTTTCCTCATATCCTTGTTACTCTGCTGCATCTCAGCC
TTTTTCTGTTCTCTAATCATGGCTCTTCTAACACGAGGTCGCAGTTCTCT
AACACGTCGAGGAGGCATCACGTATGGTTCAAGGGGCCGGTCGCCAAAAG
GGTGCTCGCTTCCAGGAAAAATCCTCAGTTTTCGATCTCTATCATCACGT
AATTTATTTCTTGGAAGCATGCGTAAGACAGCTTTACGAATGGCTTCTGT
AGGGTCCCTCTCCATCTGTTCTTTTAAGGTCCTTTCCTTGAGGTGGCCTA
TATACCCGGTATGCCAGTAGTAAACCTTATTTTTAAGTTTCCTCCCAGTA
ACACATATATCTTTTGCATTAAGCACAATGCACATATCACCATCATCACG
ATTAGGAGCGTACGTAGGCTTATCCTTGCCTTGAACGACAGTAGCTACCT
GAGATGCTAATCTCCCAAGGACCTGGCCTTTAGCATCAAAAACTCTCCAT
CGTAGACCTTCTAGATTGATTCGCCTCAGCCCAGCAAGCGCTTTCTTCAT
GTTGCCACTGAAAGCTGTGGCTGCTTGGTTTGCCATTTTTCTATTGCTCT
GTTATAACTTCTTTTAAACAAAAATGAGTAACGCAAATCAAATTC
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