CX070078
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_SYMTH (50S ribosomal protein L13 OS=Symbiobacterium thermophilum GN=rplM PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23 Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = -3 Query: 275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652 +W V DA+G+ LGRLAS+VA +++GK KPT+ P+ D GD I++NA+ I VTG+K+ +KVYY H+GY G K T ++ + R P + A+ MLP N +++ G EHP + EP Sbjct: 15 KWYVVDAEGKTLGRLASKVAAILRGKHKPTFTPHVDCGDFVIIVNAEKIQVTGKKVTDKVYYRHSGYPGGQKATTFEQMIARRPERVLELAIKGMLPHNRLGRQMYRKLKVYAGPEHPHAAQKPEP 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_PELPD (50S ribosomal protein L13 OS=Pelobacter propionicus (strain DSM 2379) GN=rplM PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23 Identity = 57/134 (42.54%), Postives = 84/134 (62.69%), Query Frame = -3 Query: 299 MKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 700 MK +A + + + W + DA+ VLGRLASQ+A +++GK+K Y P+ D GD IV+NA+ I +TGRKL +K YY H+G+ G LKE + + +E+ P E I++AV MLP+N +I+ GS HP Sbjct: 1 MKTEVAKIENVKRD---WYLVDAQEMVLGRLASQIANILRGKNKAIYTPSVDTGDFVIVVNAEKIALTGRKLADKSYYSHSGFPGGLKEISAGKLLEKKPEELIKRAVKGMLPKNKLSRHMLKKLKIYAGSSHP 131
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_OLICO (50S ribosomal protein L13 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplM PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23 Identity = 56/119 (47.06%), Postives = 77/119 (64.71%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DAKG V+GRLA+ VA ++GK PTY P+ D GD IV+NA + +TGRK NK+YY HTG+IG +KER+ K +E R P + KA+ RM+PR R++ G+EHP Sbjct: 14 KWVIIDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIVINAAQVVLTGRKRDNKMYYNHTGFIGGIKERSAKSILEGRFPERVLEKAIERMIPRGPLGRIQMGNLRVYAGAEHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCS2 (50S ribosomal protein L13 OS=Mycobacterium smegmatis GN=rplM PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23 Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = -3 Query: 272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649 W V DA VLGRLAS AT+++GK KPT+ PN D GD IV+NA I V+G KL K Y H+GY G L++RT+ E +E+ PT + A++ MLP N +++ G +HP + P+ Sbjct: 15 WYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVINADKIAVSGDKLTKKFAYRHSGYPGGLRKRTIGELLEKHPTRVVENAIIGMLPHNKLGRQIQKKLKVYAGPDHPHAAQQPIPF 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_CYAP7 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7424) GN=rplM PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23 Identity = 56/125 (44.80%), Postives = 79/125 (63.20%), Query Frame = -3 Query: 299 NLEGL--RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 667 NLE L +W V DA GQ LGRLAS++A +++GK+KPTY P+ D GD IV+NA+ + VTG+K + KVY+ H+G G +K T ++ R P + KAV MLP+N +++ GS HP Sbjct: 8 NLETLDKQWYVIDAAGQRLGRLASEIAMILRGKNKPTYTPHLDTGDFVIVINAEKVIVTGKKSQQKVYHRHSGRPGGMKVETFEKLQARLPERIVEKAVKGMLPKNSLGRQLFTKLKVYSGSNHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BRAJA (50S ribosomal protein L13 OS=Bradyrhizobium japonicum GN=rplM PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23 Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DAKG V+GRLA+ VA ++GK PTY P+ D GD I++NA+ +TGRK + K YY HTGY+GH+KERT ++ +E + P + KAV RM+PR R++ G++HP Sbjct: 14 KWVLIDAKGLVVGRLATIVAMRLRGKHLPTYTPHVDCGDNVIIINAQHAVLTGRKREQKTYYKHTGYVGHVKERTARQILEGKHPERVLEKAVERMIPRGPLGRVQMGNLRVYGGADHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MICLC (50S ribosomal protein L13 OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rplM PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23 Identity = 52/118 (44.07%), Postives = 76/118 (64.41%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA VLGRLAS AT+++GK KPT+AP+ D GD I++NA+ + +TG KL+ K Y H+GY G LK ++ E +E +P A+ KAV MLP+N +++ G+EHP Sbjct: 14 QWHIIDATDVVLGRLASHTATLLRGKHKPTFAPHMDMGDYVIIVNAEKVALTGAKLEKKRAYRHSGYPGGLKSQSYAELLETNPVRAVEKAVKGMLPKNSLAAQQLSKLKVYKGAEHP 131
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_DESVV (50S ribosomal protein L13 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplM PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23 Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = -3 Query: 299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649 W V DA+ ++LGRLA+Q+A ++GK KP +AP+ D+GD +V+N + I VTG+KL K YY H+GY+G L+E +L++ + P E + KAV MLPRN +++ G+EHP Sbjct: 15 WFVVDAEDKILGRLATQIAHRLRGKHKPEFAPHMDNGDFIVVVNCEKIKVTGKKLDQKKYYNHSGYVGGLRETSLEKLLASKPEEVLLKAVRGMLPRNRLGRAMLTKLKVYRGTEHP 131
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_DESVH (50S ribosomal protein L13 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplM PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23 Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = -3 Query: 299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649 W V DA+ ++LGRLA+Q+A ++GK KP +AP+ D+GD +V+N + I VTG+KL K YY H+GY+G L+E +L++ + P E + KAV MLPRN +++ G+EHP Sbjct: 15 WFVVDAEDKILGRLATQIAHRLRGKHKPEFAPHMDNGDFIVVVNCEKIKVTGKKLDQKKYYNHSGYVGGLRETSLEKLLASKPEEVLLKAVRGMLPRNRLGRAMLTKLKVYRGTEHP 131
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_DESAD (50S ribosomal protein L13 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplM PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23 Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = -3 Query: 299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649 W V DA+ VLGRLA+Q+A ++GKDK + P+ D GD +VLNA I VTG K+ K YY HT + G LKERTLK +E+ P I AV MLP+N +++ G+EHP Sbjct: 15 WFVVDAENMVLGRLATQIANKLRGKDKAMFTPHVDTGDFVVVLNADKIKVTGNKMDQKTYYKHTNHPGGLKERTLKVMLEKKPEVVIETAVRGMLPKNRLGKQMIKKLKVYAGTEHP 131 The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bpback to top |