CX070078

Overview
NameCX070078
Unique NameCX070078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_SYMTH (50S ribosomal protein L13 OS=Symbiobacterium thermophilum GN=rplM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = -3
Query:  275 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 652
            +W V DA+G+ LGRLAS+VA +++GK KPT+ P+ D GD  I++NA+ I VTG+K+ +KVYY H+GY G  K  T ++ + R P   +  A+  MLP N          +++ G EHP   +  EP
Sbjct:   15 KWYVVDAEGKTLGRLASKVAAILRGKHKPTFTPHVDCGDFVIIVNAEKIQVTGKKVTDKVYYRHSGYPGGQKATTFEQMIARRPERVLELAIKGMLPHNRLGRQMYRKLKVYAGPEHPHAAQKPEP 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_PELPD (50S ribosomal protein L13 OS=Pelobacter propionicus (strain DSM 2379) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 57/134 (42.54%), Postives = 84/134 (62.69%), Query Frame = -3
Query:  299 MKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 700
            MK  +A +  +  +   W + DA+  VLGRLASQ+A +++GK+K  Y P+ D GD  IV+NA+ I +TGRKL +K YY H+G+ G LKE +  + +E+ P E I++AV  MLP+N          +I+ GS HP
Sbjct:    1 MKTEVAKIENVKRD---WYLVDAQEMVLGRLASQIANILRGKNKAIYTPSVDTGDFVIVVNAEKIALTGRKLADKSYYSHSGFPGGLKEISAGKLLEKKPEELIKRAVKGMLPKNKLSRHMLKKLKIYAGSSHP 131          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_OLICO (50S ribosomal protein L13 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 56/119 (47.06%), Postives = 77/119 (64.71%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DAKG V+GRLA+ VA  ++GK  PTY P+ D GD  IV+NA  + +TGRK  NK+YY HTG+IG +KER+ K  +E R P   + KA+ RM+PR           R++ G+EHP
Sbjct:   14 KWVIIDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIVINAAQVVLTGRKRDNKMYYNHTGFIGGIKERSAKSILEGRFPERVLEKAIERMIPRGPLGRIQMGNLRVYAGAEHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCS2 (50S ribosomal protein L13 OS=Mycobacterium smegmatis GN=rplM PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = -3
Query:  272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649
            W V DA   VLGRLAS  AT+++GK KPT+ PN D GD  IV+NA  I V+G KL  K  Y H+GY G L++RT+ E +E+ PT  +  A++ MLP N          +++ G +HP   +   P+
Sbjct:   15 WYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVINADKIAVSGDKLTKKFAYRHSGYPGGLRKRTIGELLEKHPTRVVENAIIGMLPHNKLGRQIQKKLKVYAGPDHPHAAQQPIPF 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_CYAP7 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7424) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 56/125 (44.80%), Postives = 79/125 (63.20%), Query Frame = -3
Query:  299 NLEGL--RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 667
            NLE L  +W V DA GQ LGRLAS++A +++GK+KPTY P+ D GD  IV+NA+ + VTG+K + KVY+ H+G  G +K  T ++   R P   + KAV  MLP+N          +++ GS HP
Sbjct:    8 NLETLDKQWYVIDAAGQRLGRLASEIAMILRGKNKPTYTPHLDTGDFVIVINAEKVIVTGKKSQQKVYHRHSGRPGGMKVETFEKLQARLPERIVEKAVKGMLPKNSLGRQLFTKLKVYSGSNHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BRAJA (50S ribosomal protein L13 OS=Bradyrhizobium japonicum GN=rplM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DAKG V+GRLA+ VA  ++GK  PTY P+ D GD  I++NA+   +TGRK + K YY HTGY+GH+KERT ++ +E + P   + KAV RM+PR           R++ G++HP
Sbjct:   14 KWVLIDAKGLVVGRLATIVAMRLRGKHLPTYTPHVDCGDNVIIINAQHAVLTGRKREQKTYYKHTGYVGHVKERTARQILEGKHPERVLEKAVERMIPRGPLGRVQMGNLRVYGGADHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MICLC (50S ribosomal protein L13 OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23
Identity = 52/118 (44.07%), Postives = 76/118 (64.41%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA   VLGRLAS  AT+++GK KPT+AP+ D GD  I++NA+ + +TG KL+ K  Y H+GY G LK ++  E +E +P  A+ KAV  MLP+N          +++ G+EHP
Sbjct:   14 QWHIIDATDVVLGRLASHTATLLRGKHKPTFAPHMDMGDYVIIVNAEKVALTGAKLEKKRAYRHSGYPGGLKSQSYAELLETNPVRAVEKAVKGMLPKNSLAAQQLSKLKVYKGAEHP 131          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_DESVV (50S ribosomal protein L13 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23
Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = -3
Query:  299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649
            W V DA+ ++LGRLA+Q+A  ++GK KP +AP+ D+GD  +V+N + I VTG+KL  K YY H+GY+G L+E +L++ +   P E + KAV  MLPRN          +++ G+EHP
Sbjct:   15 WFVVDAEDKILGRLATQIAHRLRGKHKPEFAPHMDNGDFIVVVNCEKIKVTGKKLDQKKYYNHSGYVGGLRETSLEKLLASKPEEVLLKAVRGMLPRNRLGRAMLTKLKVYRGTEHP 131          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_DESVH (50S ribosomal protein L13 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23
Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = -3
Query:  299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649
            W V DA+ ++LGRLA+Q+A  ++GK KP +AP+ D+GD  +V+N + I VTG+KL  K YY H+GY+G L+E +L++ +   P E + KAV  MLPRN          +++ G+EHP
Sbjct:   15 WFVVDAEDKILGRLATQIAHRLRGKHKPEFAPHMDNGDFIVVVNCEKIKVTGKKLDQKKYYNHSGYVGGLRETSLEKLLASKPEEVLLKAVRGMLPRNRLGRAMLTKLKVYRGTEHP 131          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_DESAD (50S ribosomal protein L13 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23
Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = -3
Query:  299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649
            W V DA+  VLGRLA+Q+A  ++GKDK  + P+ D GD  +VLNA  I VTG K+  K YY HT + G LKERTLK  +E+ P   I  AV  MLP+N          +++ G+EHP
Sbjct:   15 WFVVDAENMVLGRLATQIANKLRGKDKAMFTPHVDTGDFVVVLNADKIKVTGNKMDQKTYYKHTNHPGGLKERTLKVMLEKKPEVVIETAVRGMLPKNRLGKQMIKKLKVYAGTEHP 131          
The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_SYMTH1.071e-2342.0650S ribosomal protein L13 OS=Symbiobacterium therm... [more]
RL13_PELPD1.071e-2342.5450S ribosomal protein L13 OS=Pelobacter propionicu... [more]
RL13_OLICO1.071e-2347.0650S ribosomal protein L13 OS=Oligotropha carboxido... [more]
RL13_MYCS21.071e-2342.8650S ribosomal protein L13 OS=Mycobacterium smegmat... [more]
RL13_CYAP71.071e-2344.8050S ribosomal protein L13 OS=Cyanothece sp. (strai... [more]
RL13_BRAJA1.071e-2345.3850S ribosomal protein L13 OS=Bradyrhizobium japoni... [more]
RL13_MICLC1.399e-2344.0750S ribosomal protein L13 OS=Micrococcus luteus (s... [more]
RL13_DESVV1.399e-2344.4450S ribosomal protein L13 OS=Desulfovibrio vulgari... [more]
RL13_DESVH1.399e-2344.4450S ribosomal protein L13 OS=Desulfovibrio vulgari... [more]
RL13_DESAD1.399e-2347.0150S ribosomal protein L13 OS=Desulfovibrio salexig... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F05-K10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bp
TTTTCAAAACCAAAGAATATGCTAGACTGCCATTCCAACATGTAACAGAC
AATGCCCGGATTGTTTGGGTTACATACAGAAAACGAGTATTCCCTATCAA
AGCAAATAGAGCCCCAACAGATCTTCAGGCAGTCACTTCTGCTTCAACTT
CTTTCTTTCTGTTTTTCCTCATATCCTTGTTACTCTGCTGCATCTCAGCC
TTTTTCTGTTCTCTAATCATGGCTCTTCTAACACGAGGTCGCAGTTCTCT
AACACGTCGAGGAGGCATCACGTATGGTTCAAGGGGCCGGTCGCCAAAAG
GGTGCTCGCTTCCAGGAAAAATCCTCAGTTTTCGATCTCTATCATCACGT
AATTTATTTCTTGGAAGCATGCGTAAGACAGCTTTACGAATGGCTTCTGT
AGGGTCCCTCTCCATCTGTTCTTTTAAGGTCCTTTCCTTGAGGTGGCCTA
TATACCCGGTATGCCAGTAGTAAACCTTATTTTTAAGTTTCCTCCCAGTA
ACACATATATCTTTTGCATTAAGCACAATGCACATATCACCATCATCACG
ATTAGGAGCGTACGTAGGCTTATCCTTGCCTTGAACGACAGTAGCTACCT
GAGATGCTAATCTCCCAAGGACCTGGCCTTTAGCATCAAAAACTCTCCAT
CGTAGACCTTCTAGATTGATTCGCCTCAGCCCAGCAAGCGCTTTCTTCAT
GTTGCCACTGAAAGCTGTGGCTGCTTGGTTTGCCATTTTTCTATTGCTCT
GTTATAACTTCTTTTAAACAAAAATGAGTAACGCAAATCAAATTC
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