CX070078
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_ACIF5 (50S ribosomal protein L13 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplM PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23 Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = -3 Query: 275 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 649 W V DA +VLGRL+ ++A ++GK KP Y P+ D GD +V+NA I VTG K K+K+YY HTGY+G+LK + ++ E P I AV MLP+N +++ GSEHP + +P Sbjct: 15 WFVVDATDKVLGRLSVELAKRLRGKHKPEYTPHADTGDYIVVINADKIAVTGNKAKDKIYYHHTGYVGNLKSASFEKMKETHPERIIELAVKGMLPKNPLGRAMFKKLKVYTGSEHPHSAQQPQP 139
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_ACIF2 (50S ribosomal protein L13 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplM PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23 Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = -3 Query: 275 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEP 649 W V DA +VLGRL+ ++A ++GK KP Y P+ D GD +V+NA I VTG K K+K+YY HTGY+G+LK + ++ E P I AV MLP+N +++ GSEHP + +P Sbjct: 15 WFVVDATDKVLGRLSVELAKRLRGKHKPEYTPHADTGDYIVVINADKIAVTGNKAKDKIYYHHTGYVGNLKSASFEKMKETHPERIIELAVKGMLPKNPLGRAMFKKLKVYTGSEHPHSAQQPQP 139
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_THEFY (50S ribosomal protein L13 OS=Thermobifida fusca (strain YX) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23 Identity = 56/127 (44.09%), Postives = 77/127 (60.63%), Query Frame = -3 Query: 272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652 +W V DA VLGRLAS+VAT+++GK KP YAP+ D GD IV+NA + +TG+KL+ K Y H+GY G L+ E M ++P A+ KAV MLP+N +++ G EHP + PY Sbjct: 14 QWHVIDASDVVLGRLASRVATLLRGKHKPYYAPHVDTGDYVIVVNADKVVLTGKKLEQKRAYRHSGYPGGLRSIPYSELMAKNPARAVEKAVKGMLPKNSLGRRMAKKLKVYAGPEHPHQAQKPVPY 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_RHISN (50S ribosomal protein L13 OS=Rhizobium sp. (strain NGR234) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23 Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA+G V+GRLAS +A ++GK K T+ P+ DDGD IV+NA+ +TG+K +K YYWHTGY G +KERT ++ +E R P I KAV RM+PR R++ G+ HP Sbjct: 14 KWILIDAEGLVVGRLASIIANRLRGKHKATFTPHVDDGDNVIVINAEKAVLTGKKYTDKKYYWHTGYPGGIKERTARQIIEGRFPERVIEKAVERMVPRGPLGRRQMKNLRVYAGTNHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_MYCMM (50S ribosomal protein L13 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23 Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = -3 Query: 299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649 W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++ KL+NK+ Y H+GY G L++R++ E ME+ P + KA++ MLP+N R++ G EHP Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISNEKLRNKMAYSHSGYPGGLRKRSIGELMEKHPDRVVEKAIVGMLPKNKLSRQIQSKLRVYAGPEHP 131
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_HAEPS (50S ribosomal protein L13 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23 Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = -3 Query: 302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649 W V DA G+ LGRLA+++A ++GK K Y P+ D GD IV+NA+ + VTG+K +K+YYWHTGY+G +K+ T KE + R P I AV MLP+ +++ G+EH Sbjct: 15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGKKETDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEH 130
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_GEOSM (50S ribosomal protein L13 OS=Geobacter sp. (strain M21) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23 Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = -3 Query: 299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649 W + D +VLGR+A+++A V++GK+KPT+ P+ D GD IV+NA+ I +TGRKL +KVYY H+ Y G LKE T + +++ P E ++KAV MLP+N +I+ G HP Sbjct: 15 WYLVDVDNKVLGRVATEIANVLRGKNKPTFTPSVDTGDFVIVVNAEKIALTGRKLADKVYYSHSSYPGGLKEITAGKLLDKKPEELLKKAVKGMLPKNKLARHMLKKLKIYSGGAHP 131
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_GEOLS (50S ribosomal protein L13 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23 Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W V DA+ VLGRLA+QVA V++GK KP Y P+ D GD +++NA+ I +TG K+ +KVYY H+G+ G +K T + + P E IRKAV MLP+N +++ G HP Sbjct: 14 QWFVVDAENVVLGRLATQVANVLRGKHKPMYTPSVDTGDFVVIVNAEKIALTGNKMADKVYYSHSGFPGGIKSSTAAAMLSKKPEELIRKAVKGMLPKNKLARHMLKKLKVYSGGAHP 131
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_DESDG (50S ribosomal protein L13 OS=Desulfovibrio desulfuricans (strain G20) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23 Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = -3 Query: 299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649 W V DA+ ++LGRLA+Q+A ++GK KP +AP+ D+GD +V+N + I VTG+KL +K YY ++GY+G L+E+TL + P A+ AV MLPRN +++ GSEHP Sbjct: 15 WYVVDAEDKILGRLAAQIAHRLRGKHKPEFAPHVDNGDFIVVVNCEKIAVTGKKLSDKKYYRYSGYVGGLREQTLANVLATKPERALINAVKGMLPRNRLGRAMLKKLKVYAGSEHP 131
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_ACTPJ (50S ribosomal protein L13 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23 Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = -3 Query: 302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649 W V DA G+ LGRLA+++A ++GK K Y P+ D GD IV+NA+ + VTG+K +K+YYWHTGY+G +K+ T KE + R P I AV MLP+ +++ G+EH Sbjct: 15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGKKETDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGREMFRKLKVYAGNEH 130 The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bpback to top |