CX070078
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_HERA2 (50S ribosomal protein L13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23 Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = -3 Query: 272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649 W V DA+ QVLGRLA+Q+AT+++GK KPTY P+ D GD IV+NA+ I VTG K K+YY H+ + G LK K M+ P I AV MLPRN +++ G HP + + Y Sbjct: 15 WLVVDAQNQVLGRLATQIATLIRGKHKPTYTPSMDGGDFVIVVNAEKIRVTGDKANQKIYYRHSNFPGGLKRTAYKVMMQTHPERIIYFAVKGMLPRNRLSRHIIKKLKVYAGESHPHASQSPKVY 140
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_HELHP (50S ribosomal protein L13 OS=Helicobacter hepaticus GN=rplM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23 Identity = 49/118 (41.53%), Postives = 76/118 (64.41%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W V DAK +V GRL +++AT+++GK KP + P+ D GD +++NA ++ TG KLK+K Y+ H+GY G K +TL+E +E+ P + AV MLP+N +++ GSEHP Sbjct: 15 QWIVLDAKDKVFGRLITEIATLLRGKHKPCFTPHIDCGDFVVIINATEVKFTGMKLKDKEYFTHSGYFGSTKSKTLQEMLEKTPEKLYHLAVRGMLPKNKLGRAMLKKLKVYRGSEHP 132
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_HAES2 (50S ribosomal protein L13 OS=Haemophilus somnus (strain 2336) GN=rplM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23 Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = -3 Query: 302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649 W V DA G+ LGRLA+++A ++GK K Y P+ D GD +V+NA+ + VTG K +K+YYWHTGY+G +K+ T KE + R P I AV MLP+ +++ GSEH Sbjct: 15 WYVVDATGKTLGRLAAELARRLRGKHKAEYTPHVDTGDYIVVINAEKVAVTGNKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGSEH 130
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_HAES1 (50S ribosomal protein L13 OS=Haemophilus somnus (strain 129Pt) GN=rplM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23 Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = -3 Query: 302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649 W V DA G+ LGRLA+++A ++GK K Y P+ D GD +V+NA+ + VTG K +K+YYWHTGY+G +K+ T KE + R P I AV MLP+ +++ GSEH Sbjct: 15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIVVINAEKVAVTGNKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGSEH 130
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_HAEIN (50S ribosomal protein L13 OS=Haemophilus influenzae GN=rplM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23 Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = -3 Query: 302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649 W V DA G+ LGRLA+++A ++GK K Y P+ D GD IV+NA + VTGRK +K+YYWHTGY+G +K+ T KE + R P I AV MLP+ +++ G EH Sbjct: 15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGGEH 130
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_HAEIG (50S ribosomal protein L13 OS=Haemophilus influenzae (strain PittGG) GN=rplM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23 Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = -3 Query: 302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649 W V DA G+ LGRLA+++A ++GK K Y P+ D GD IV+NA + VTGRK +K+YYWHTGY+G +K+ T KE + R P I AV MLP+ +++ G EH Sbjct: 15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGGEH 130
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BACC2 (50S ribosomal protein L13 OS=Bacillus cereus (strain G9842) GN=rplM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23 Identity = 51/127 (40.16%), Postives = 79/127 (62.20%), Query Frame = -3 Query: 272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652 +W V DA+GQ LGRL+++VA++++GK+KPT+ P+ D GD I++NA+ I +TG KL +K+YY HT + G LK+RT E P + + A+ MLP+ ++ G+EHP + E Y Sbjct: 15 KWYVVDAEGQTLGRLSTEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_STRMK (50S ribosomal protein L13 OS=Stenotrophomonas maltophilia (strain K279a) GN=rplM PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.071e-23 Identity = 51/117 (43.59%), Postives = 77/117 (65.81%), Query Frame = -3 Query: 299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649 W + DA+G+ LGRLA+++A ++GK KP Y P+ D GD +V+NA+ I VTG+KL++K+Y+ TGYIG+LK +L + +ER P I AV MLP+ +++ G+EHP Sbjct: 15 WYLVDAEGKTLGRLATELARRLRGKHKPVYTPHVDTGDYLVVINAEKIAVTGKKLQDKMYHRFTGYIGNLKTESLAQALERHPERVIEIAVKGMLPKGPLGRQMYRKLKVYAGTEHP 131
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_PERMH (50S ribosomal protein L13 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplM PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.071e-23 Identity = 56/116 (48.28%), Postives = 72/116 (62.07%), Query Frame = -3 Query: 302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649 W V DA G+ LGRLA+ +A +++GK KP + P+ D GD IVLNA I VTG+KL +K Y WHT G L RTL+ +E P E IR AV RMLP+N +++ GSEH Sbjct: 15 WYVIDATGKNLGRLATLIANILRGKHKPYFQPDVDVGDFVIVLNADKITVTGKKLTDKEYKWHTNRPGGLNVRTLQWMLEHKPEEVIRLAVERMLPKNKLQKRFMKRLKVYTGSEH 130
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_METNO (50S ribosomal protein L13 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplM PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.071e-23 Identity = 59/119 (49.58%), Postives = 74/119 (62.18%), Query Frame = -3 Query: 299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652 +W + DA+G V+GRLAS VA ++GK KP Y P+ D GD IV+NA + TGRK KVYY HTGY G +KER+ K +E R P + KAV RMLPR R++ GSEHP Sbjct: 14 KWVIIDAEGLVVGRLASIVAMRLRGKHKPQYTPHVDCGDNVIVINADKVKFTGRKYDQKVYYHHTGYPGGIKERSAKFILEGRFPERVVEKAVERMLPRGPLFRKILGNLRVYKGSEHP 132 The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bpback to top |