CX070078

Overview
NameCX070078
Unique NameCX070078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_HERA2 (50S ribosomal protein L13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = -3
Query:  272 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 649
            W V DA+ QVLGRLA+Q+AT+++GK KPTY P+ D GD  IV+NA+ I VTG K   K+YY H+ + G LK    K  M+  P   I  AV  MLPRN          +++ G  HP   +  + Y
Sbjct:   15 WLVVDAQNQVLGRLATQIATLIRGKHKPTYTPSMDGGDFVIVVNAEKIRVTGDKANQKIYYRHSNFPGGLKRTAYKVMMQTHPERIIYFAVKGMLPRNRLSRHIIKKLKVYAGESHPHASQSPKVY 140          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_HELHP (50S ribosomal protein L13 OS=Helicobacter hepaticus GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 49/118 (41.53%), Postives = 76/118 (64.41%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W V DAK +V GRL +++AT+++GK KP + P+ D GD  +++NA ++  TG KLK+K Y+ H+GY G  K +TL+E +E+ P +    AV  MLP+N          +++ GSEHP
Sbjct:   15 QWIVLDAKDKVFGRLITEIATLLRGKHKPCFTPHIDCGDFVVIINATEVKFTGMKLKDKEYFTHSGYFGSTKSKTLQEMLEKTPEKLYHLAVRGMLPKNKLGRAMLKKLKVYRGSEHP 132          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_HAES2 (50S ribosomal protein L13 OS=Haemophilus somnus (strain 2336) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = -3
Query:  302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  +V+NA+ + VTG K  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+           +++ GSEH
Sbjct:   15 WYVVDATGKTLGRLAAELARRLRGKHKAEYTPHVDTGDYIVVINAEKVAVTGNKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGSEH 130          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_HAES1 (50S ribosomal protein L13 OS=Haemophilus somnus (strain 129Pt) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = -3
Query:  302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  +V+NA+ + VTG K  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+           +++ GSEH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIVVINAEKVAVTGNKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGSEH 130          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_HAEIN (50S ribosomal protein L13 OS=Haemophilus influenzae GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = -3
Query:  302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA  + VTGRK  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+           +++ G EH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGGEH 130          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_HAEIG (50S ribosomal protein L13 OS=Haemophilus influenzae (strain PittGG) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = -3
Query:  302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA  + VTGRK  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+           +++ G EH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGGEH 130          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_BACC2 (50S ribosomal protein L13 OS=Bacillus cereus (strain G9842) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 51/127 (40.16%), Postives = 79/127 (62.20%), Query Frame = -3
Query:  272 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHPFGDRPLEPY 652
            +W V DA+GQ LGRL+++VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLSTEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_STRMK (50S ribosomal protein L13 OS=Stenotrophomonas maltophilia (strain K279a) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.071e-23
Identity = 51/117 (43.59%), Postives = 77/117 (65.81%), Query Frame = -3
Query:  299 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 649
            W + DA+G+ LGRLA+++A  ++GK KP Y P+ D GD  +V+NA+ I VTG+KL++K+Y+  TGYIG+LK  +L + +ER P   I  AV  MLP+           +++ G+EHP
Sbjct:   15 WYLVDAEGKTLGRLATELARRLRGKHKPVYTPHVDTGDYLVVINAEKIAVTGKKLQDKMYHRFTGYIGNLKTESLAQALERHPERVIEIAVKGMLPKGPLGRQMYRKLKVYAGTEHP 131          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_PERMH (50S ribosomal protein L13 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.071e-23
Identity = 56/116 (48.28%), Postives = 72/116 (62.07%), Query Frame = -3
Query:  302 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEH 649
            W V DA G+ LGRLA+ +A +++GK KP + P+ D GD  IVLNA  I VTG+KL +K Y WHT   G L  RTL+  +E  P E IR AV RMLP+N          +++ GSEH
Sbjct:   15 WYVIDATGKNLGRLATLIANILRGKHKPYFQPDVDVGDFVIVLNADKITVTGKKLTDKEYKWHTNRPGGLNVRTLQWMLEHKPEEVIRLAVERMLPKNKLQKRFMKRLKVYTGSEH 130          
BLAST of CX070078 vs. ExPASy Swiss-Prot
Match: RL13_METNO (50S ribosomal protein L13 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplM PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.071e-23
Identity = 59/119 (49.58%), Postives = 74/119 (62.18%), Query Frame = -3
Query:  299 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXRIFPGSEHP 652
            +W + DA+G V+GRLAS VA  ++GK KP Y P+ D GD  IV+NA  +  TGRK   KVYY HTGY G +KER+ K  +E R P   + KAV RMLPR           R++ GSEHP
Sbjct:   14 KWVIIDAEGLVVGRLASIVAMRLRGKHKPQYTPHVDCGDNVIVINADKVKFTGRKYDQKVYYHHTGYPGGIKERSAKFILEGRFPERVVEKAVERMLPRGPLFRKILGNLRVYKGSEHP 132          
The following BLAST results are available for this feature:
BLAST of CX070078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_HERA23.117e-2343.6550S ribosomal protein L13 OS=Herpetosiphon auranti... [more]
RL13_HELHP3.117e-2341.5350S ribosomal protein L13 OS=Helicobacter hepaticu... [more]
RL13_HAES23.117e-2343.9750S ribosomal protein L13 OS=Haemophilus somnus (s... [more]
RL13_HAES13.117e-2343.9750S ribosomal protein L13 OS=Haemophilus somnus (s... [more]
RL13_HAEIN3.117e-2344.8350S ribosomal protein L13 OS=Haemophilus influenza... [more]
RL13_HAEIG3.117e-2344.8350S ribosomal protein L13 OS=Haemophilus influenza... [more]
RL13_BACC23.117e-2340.1650S ribosomal protein L13 OS=Bacillus cereus (stra... [more]
RL13_STRMK4.071e-2343.5950S ribosomal protein L13 OS=Stenotrophomonas malt... [more]
RL13_PERMH4.071e-2348.2850S ribosomal protein L13 OS=Persephonella marina ... [more]
RL13_METNO4.071e-2349.5850S ribosomal protein L13 OS=Methylobacterium nodu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F05-K10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070078 ID=CX070078; Name=CX070078; organism=Citrus sinensis; type=EST; length=795bp
TTTTCAAAACCAAAGAATATGCTAGACTGCCATTCCAACATGTAACAGAC
AATGCCCGGATTGTTTGGGTTACATACAGAAAACGAGTATTCCCTATCAA
AGCAAATAGAGCCCCAACAGATCTTCAGGCAGTCACTTCTGCTTCAACTT
CTTTCTTTCTGTTTTTCCTCATATCCTTGTTACTCTGCTGCATCTCAGCC
TTTTTCTGTTCTCTAATCATGGCTCTTCTAACACGAGGTCGCAGTTCTCT
AACACGTCGAGGAGGCATCACGTATGGTTCAAGGGGCCGGTCGCCAAAAG
GGTGCTCGCTTCCAGGAAAAATCCTCAGTTTTCGATCTCTATCATCACGT
AATTTATTTCTTGGAAGCATGCGTAAGACAGCTTTACGAATGGCTTCTGT
AGGGTCCCTCTCCATCTGTTCTTTTAAGGTCCTTTCCTTGAGGTGGCCTA
TATACCCGGTATGCCAGTAGTAAACCTTATTTTTAAGTTTCCTCCCAGTA
ACACATATATCTTTTGCATTAAGCACAATGCACATATCACCATCATCACG
ATTAGGAGCGTACGTAGGCTTATCCTTGCCTTGAACGACAGTAGCTACCT
GAGATGCTAATCTCCCAAGGACCTGGCCTTTAGCATCAAAAACTCTCCAT
CGTAGACCTTCTAGATTGATTCGCCTCAGCCCAGCAAGCGCTTTCTTCAT
GTTGCCACTGAAAGCTGTGGCTGCTTGGTTTGCCATTTTTCTATTGCTCT
GTTATAACTTCTTTTAAACAAAAATGAGTAACGCAAATCAAATTC
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