CX070077

Overview
NameCX070077
Unique NameCX070077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_AGRVS (50S ribosomal protein L13 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplM PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.965e-25
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            +W + DA+G V+GRLA+ +AT ++GK K TY P+ DDGD  IV+NA+ + +TG+K  +K YYWHTGY G +KERT ++ +E R P   + KAV RM+PR            ++ GS HP
Sbjct:   14 KWVIIDAEGLVVGRLATVIATYLRGKHKVTYTPHVDDGDNVIVINAEKVVLTGKKYTDKTYYWHTGYPGGIKERTARQIIEGRFPERVLEKAVERMIPRGPLGRRQMKNLRVYAGSAHP 132          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_CHLSY (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplM PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.567e-25
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD  IV+NA+ I +TGRK   K+YY HTGY G +K    K  + + P   +R AV RMLP+N           I+ G  HP   +  +PY
Sbjct:   15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIYYRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAAQQPKPY 140          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_CHLAA (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplM PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.567e-25
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD  IV+NA+ I +TGRK   K+YY HTGY G +K    K  + + P   +R AV RMLP+N           I+ G  HP   +  +PY
Sbjct:   15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIYYRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAAQQPKPY 140          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_CLOD6 (50S ribosomal protein L13 OS=Clostridium difficile (strain 630) GN=rplM PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.352e-25
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 497
            +W + DA+G+ LGRLA+++ATV++GK KPT+ P+ D GD  +V+NA+ I ++G+KL  K Y +HTGY+G LKE + ++ M++ P E I  AV  MLP+N           +F G+EH
Sbjct:   14 KWYLVDAEGKTLGRLATEIATVLRGKHKPTFTPHVDGGDFVVVVNAEKIVLSGKKLDQKYYRYHTGYVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEH 130          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BART1 (50S ribosomal protein L13 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplM PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.352e-25
Identity = 56/119 (47.06%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            +W + DA+  VLGRLA+ VA  ++GK K T+ P+ DDGD  IV+NA  I +TG+K  +K YYWHTGYIG +KERT ++ +E R P   + KAV RM+PR            ++ GS+HP
Sbjct:   14 KWVIIDAENLVLGRLAAFVANRLRGKHKATFTPHVDDGDNVIVINADKIALTGKKYTDKKYYWHTGYIGGIKERTARQLLEGRFPERVVEKAVERMIPRGPLGRRQLKNLRVYAGSQHP 132          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_RHOP2 (50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplM PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.378e-25
Identity = 58/119 (48.74%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            +W V DA G V+GRLA+ VA  ++GK  PTY P+ D GD  I++NA  + +TGRK  NKVYY HTG+IG +KERT K  +E R P   + KAV RM+PR            ++PG+EHP
Sbjct:   14 KWVVIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNIIIINAAKVVLTGRKRDNKVYYHHTGFIGGIKERTAKSILEGRFPERVVEKAVERMIPRGPLGRVQMGNLRVYPGAEHP 132          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_RHILO (50S ribosomal protein L13 OS=Rhizobium loti GN=rplM PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.378e-25
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            +W + DA+G V+GRLA+ +A  ++GK KPT+ P+ DDGD  IV+NA  +  TG+K  +KVYYWHTG+ G +KERT ++ +E R P   + KAV RM+PR            ++ G+EHP
Sbjct:   14 KWILIDAEGLVVGRLATVIANHLRGKHKPTFTPHVDDGDNVIVINADKVVFTGKKFTDKVYYWHTGHPGGIKERTARQLLEGRFPERVVEKAVERMVPRGPLGRRQMKNLRVYAGAEHP 132          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_AGRRK (50S ribosomal protein L13 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplM PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.378e-25
Identity = 56/119 (47.06%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            +W + DA+G V+GRLAS +A  ++GK K T+ P+ DDGD  IV+NA  I +TG+K ++KVYYWHTGY G +KERT ++ +E R P   + KAV RM+PR            ++ GS HP
Sbjct:   14 KWILIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKIVLTGKKYEDKVYYWHTGYAGGIKERTARQIIEGRFPERVVEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_EUBE2 (50S ribosomal protein L13 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=rplM PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.468e-25
Identity = 58/117 (49.57%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 497
            +W V DA    LGRLASQVA V++GK+KPTY P  D GD  IV+NA  + VTG+KL  KVYY H+ Y+G LKE TLKE ME+ P + I  AV  MLP+            ++ G +H
Sbjct:   14 KWYVVDAADYTLGRLASQVAAVLRGKNKPTYTPFLDCGDNVIVINADKVKVTGKKLDQKVYYSHSDYVGGLKETTLKEMMEKKPEKVIELAVKGMLPKGPLGRQMFTKLHVYAGPDH 130          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_RHIE6 (50S ribosomal protein L13 OS=Rhizobium etli (strain CIAT 652) GN=rplM PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.754e-25
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            +W + DA+G V+GRLAS +A  ++GK K T+ P+ DDGD  IV+NA  +  TG+K  +KVYYWHTGY G +KERT ++ +E R P   + KAV RM+PR            ++ GS HP
Sbjct:   14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKVVFTGKKYSDKVYYWHTGYAGGIKERTARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132          
The following BLAST results are available for this feature:
BLAST of CX070077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_AGRVS1.965e-2546.2250S ribosomal protein L13 OS=Agrobacterium vitis (... [more]
RL13_CHLSY2.567e-2544.4450S ribosomal protein L13 OS=Chloroflexus aurantia... [more]
RL13_CHLAA2.567e-2544.4450S ribosomal protein L13 OS=Chloroflexus aurantia... [more]
RL13_CLOD63.352e-2544.4450S ribosomal protein L13 OS=Clostridium difficile... [more]
RL13_BART13.352e-2547.0650S ribosomal protein L13 OS=Bartonella tribocorum... [more]
RL13_RHOP24.378e-2548.7450S ribosomal protein L13 OS=Rhodopseudomonas palu... [more]
RL13_RHILO4.378e-2545.3850S ribosomal protein L13 OS=Rhizobium loti GN=rpl... [more]
RL13_AGRRK4.378e-2547.0650S ribosomal protein L13 OS=Agrobacterium radioba... [more]
RL13_EUBE27.468e-2549.5750S ribosomal protein L13 OS=Eubacterium eligens (... [more]
RL13_RHIE69.754e-2546.2250S ribosomal protein L13 OS=Rhizobium etli (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070077 ID=CX070077; Name=CX070077; organism=Citrus sinensis; type=EST; length=797bp
CCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTATAACAG
AGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGCAACAT
GAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCTACGAT
GGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCATCTCAG
GTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCTAATCG
TGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATGTGTTA
CTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGTATATA
GGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGACCCTAC
AGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAAATTAC
GTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGCACCCT
TTTGGCGACCGGCCCCTTGAACCATACGTGATGCCTCCTCGACGTGTTAG
AGAACTGCGACCTCGTGTTAGAAGAGCCATGATTAGAGAACAGAAAAAGG
CTGAGATGCAGCAGAGTAACAAGGATATGAGGAAAAACAGAAAGAAAGAA
GTTGAAGCAGAAGTGACTGCCTGAAGATCTGTTGGGGCTCTATTTGCTTT
GATAGGGAATACTCGTTTTCTGTATGTAACCCAAACAATCCGGGCATTGT
CTGTTACATGTTGGAATGGCAGTCTAGCATATTCTTTGGTTTTGAAA
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