CX070077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_AGRVS (50S ribosomal protein L13 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplM PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.965e-25 Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 +W + DA+G V+GRLA+ +AT ++GK K TY P+ DDGD IV+NA+ + +TG+K +K YYWHTGY G +KERT ++ +E R P + KAV RM+PR ++ GS HP Sbjct: 14 KWVIIDAEGLVVGRLATVIATYLRGKHKVTYTPHVDDGDNVIVINAEKVVLTGKKYTDKTYYWHTGYPGGIKERTARQIIEGRFPERVLEKAVERMIPRGPLGRRQMKNLRVYAGSAHP 132
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_CHLSY (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplM PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.567e-25 Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 3 Query: 150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527 W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD IV+NA+ I +TGRK K+YY HTGY G +K K + + P +R AV RMLP+N I+ G HP + +PY Sbjct: 15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIYYRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAAQQPKPY 140
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_CHLAA (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplM PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.567e-25 Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 3 Query: 150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527 W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD IV+NA+ I +TGRK K+YY HTGY G +K K + + P +R AV RMLP+N I+ G HP + +PY Sbjct: 15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIYYRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAAQQPKPY 140
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_CLOD6 (50S ribosomal protein L13 OS=Clostridium difficile (strain 630) GN=rplM PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.352e-25 Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 497 +W + DA+G+ LGRLA+++ATV++GK KPT+ P+ D GD +V+NA+ I ++G+KL K Y +HTGY+G LKE + ++ M++ P E I AV MLP+N +F G+EH Sbjct: 14 KWYLVDAEGKTLGRLATEIATVLRGKHKPTFTPHVDGGDFVVVVNAEKIVLSGKKLDQKYYRYHTGYVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEH 130
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BART1 (50S ribosomal protein L13 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplM PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.352e-25 Identity = 56/119 (47.06%), Postives = 77/119 (64.71%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 +W + DA+ VLGRLA+ VA ++GK K T+ P+ DDGD IV+NA I +TG+K +K YYWHTGYIG +KERT ++ +E R P + KAV RM+PR ++ GS+HP Sbjct: 14 KWVIIDAENLVLGRLAAFVANRLRGKHKATFTPHVDDGDNVIVINADKIALTGKKYTDKKYYWHTGYIGGIKERTARQLLEGRFPERVVEKAVERMIPRGPLGRRQLKNLRVYAGSQHP 132
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_RHOP2 (50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplM PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.378e-25 Identity = 58/119 (48.74%), Postives = 76/119 (63.87%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 +W V DA G V+GRLA+ VA ++GK PTY P+ D GD I++NA + +TGRK NKVYY HTG+IG +KERT K +E R P + KAV RM+PR ++PG+EHP Sbjct: 14 KWVVIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNIIIINAAKVVLTGRKRDNKVYYHHTGFIGGIKERTAKSILEGRFPERVVEKAVERMIPRGPLGRVQMGNLRVYPGAEHP 132
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_RHILO (50S ribosomal protein L13 OS=Rhizobium loti GN=rplM PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.378e-25 Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 +W + DA+G V+GRLA+ +A ++GK KPT+ P+ DDGD IV+NA + TG+K +KVYYWHTG+ G +KERT ++ +E R P + KAV RM+PR ++ G+EHP Sbjct: 14 KWILIDAEGLVVGRLATVIANHLRGKHKPTFTPHVDDGDNVIVINADKVVFTGKKFTDKVYYWHTGHPGGIKERTARQLLEGRFPERVVEKAVERMVPRGPLGRRQMKNLRVYAGAEHP 132
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_AGRRK (50S ribosomal protein L13 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplM PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.378e-25 Identity = 56/119 (47.06%), Postives = 78/119 (65.55%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 +W + DA+G V+GRLAS +A ++GK K T+ P+ DDGD IV+NA I +TG+K ++KVYYWHTGY G +KERT ++ +E R P + KAV RM+PR ++ GS HP Sbjct: 14 KWILIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKIVLTGKKYEDKVYYWHTGYAGGIKERTARQIIEGRFPERVVEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_EUBE2 (50S ribosomal protein L13 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=rplM PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 7.468e-25 Identity = 58/117 (49.57%), Postives = 73/117 (62.39%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 497 +W V DA LGRLASQVA V++GK+KPTY P D GD IV+NA + VTG+KL KVYY H+ Y+G LKE TLKE ME+ P + I AV MLP+ ++ G +H Sbjct: 14 KWYVVDAADYTLGRLASQVAAVLRGKNKPTYTPFLDCGDNVIVINADKVKVTGKKLDQKVYYSHSDYVGGLKETTLKEMMEKKPEKVIELAVKGMLPKGPLGRQMFTKLHVYAGPDH 130
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_RHIE6 (50S ribosomal protein L13 OS=Rhizobium etli (strain CIAT 652) GN=rplM PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.754e-25 Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 +W + DA+G V+GRLAS +A ++GK K T+ P+ DDGD IV+NA + TG+K +KVYYWHTGY G +KERT ++ +E R P + KAV RM+PR ++ GS HP Sbjct: 14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKVVFTGKKYSDKVYYWHTGYAGGIKERTARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132 The following BLAST results are available for this feature:
BLAST of CX070077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX070077 ID=CX070077; Name=CX070077; organism=Citrus sinensis; type=EST; length=797bpback to top |