CX070077

Overview
NameCX070077
Unique NameCX070077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_AGRT5 (50S ribosomal protein L13 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplM PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.706e-24
Identity = 53/119 (44.54%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            +W + DA+G V+GRLA+ VAT ++GK K T+ P+ DDGD  IV+NA+ +  TG+K  +K YYWHTG+ G +KERT ++ +E R P   + KA+ RM+PR            ++ GS HP
Sbjct:   14 KWIIIDAEGLVVGRLATIVATRLRGKHKATFTPHVDDGDNVIVINAEKVAFTGKKYSDKKYYWHTGHPGGIKERTARQIIEGRFPERVVEKAIERMIPRGPLGRRQMKNLRVYAGSNHP 132          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_THISH (50S ribosomal protein L13 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.841e-24
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 497
            W + DA G+ LGRLAS+VA  ++GK KP Y P+ D GD  +++NA  + V+G+K ++K+YY HTGYIGH+K     + MER P  AI  AV  MLP+N           ++ G+EH
Sbjct:   15 WYLVDASGKTLGRLASEVARRLRGKHKPEYTPHVDTGDYIVIINADKVRVSGKKAQDKMYYHHTGYIGHMKSMNFNQLMERAPERAIEFAVKGMLPKNPLGRAMFKKLKVYAGTEH 130          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_RHOPB (50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplM PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.841e-24
Identity = 57/127 (44.88%), Postives = 78/127 (61.42%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEP 524
            +W V DA G V+GRLA+ VA  ++GK  PTY P+ D GD  I++NA  + +TGRK +NKVYY HTG+IG +KERT K  +E R P   + KA+ RM+PR            ++ G +HP   +  EP
Sbjct:   14 KWIVIDATGLVVGRLATLVANRLRGKHLPTYTPHVDCGDHVIIVNAAKVVLTGRKRENKVYYHHTGFIGGIKERTAKSILEGRFPERVVEKAIERMIPRGPLGRMQMGNLRVYGGPDHPHEAQQPEP 140          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_GEMAT (50S ribosomal protein L13 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.841e-24
Identity = 55/119 (46.22%), Postives = 71/119 (59.66%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRN-XXXXXXXXXXXIFPGSEHP 500
            RW V DA+G VLGRLAS+VA +++GK KP Y P+ D GD  IV+NA  + VTGRK + K Y+ HTGY+GH K       + + P   I KAV  MLP+             +F G+EHP
Sbjct:   14 RWYVVDAEGMVLGRLASEVAKIIRGKHKPMYTPHMDTGDFVIVINASKVQVTGRKAEQKTYFSHTGYMGHEKHTPFASVLAKHPERVIEKAVYGMLPKTALGRQVLRRKLRVFAGAEHP 132          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_MANSM (50S ribosomal protein L13 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplM PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 497
            W V DA G+ LGRLA+++A+ ++GK K  Y P+ D GD  IV+NA  + VTGRK  +KVYYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ GS+H
Sbjct:   15 WYVVDATGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKVYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGSQH 130          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BACHK (50S ribosomal protein L13 OS=Bacillus thuringiensis subsp. konkukian GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BACCR (50S ribosomal protein L13 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BACCQ (50S ribosomal protein L13 OS=Bacillus cereus (strain Q1) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BACC7 (50S ribosomal protein L13 OS=Bacillus cereus (strain AH187) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BACC4 (50S ribosomal protein L13 OS=Bacillus cereus (strain B4264) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
The following BLAST results are available for this feature:
BLAST of CX070077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_AGRT53.706e-2444.5450S ribosomal protein L13 OS=Agrobacterium tumefac... [more]
RL13_THISH4.841e-2444.8350S ribosomal protein L13 OS=Thioalkalivibrio sp. ... [more]
RL13_RHOPB4.841e-2444.8850S ribosomal protein L13 OS=Rhodopseudomonas palu... [more]
RL13_GEMAT4.841e-2446.2250S ribosomal protein L13 OS=Gemmatimonas aurantia... [more]
RL13_MANSM6.322e-2445.6950S ribosomal protein L13 OS=Mannheimia succinicip... [more]
RL13_BACHK6.322e-2441.7350S ribosomal protein L13 OS=Bacillus thuringiensi... [more]
RL13_BACCR6.322e-2441.7350S ribosomal protein L13 OS=Bacillus cereus (stra... [more]
RL13_BACCQ6.322e-2441.7350S ribosomal protein L13 OS=Bacillus cereus (stra... [more]
RL13_BACC76.322e-2441.7350S ribosomal protein L13 OS=Bacillus cereus (stra... [more]
RL13_BACC46.322e-2441.7350S ribosomal protein L13 OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070077 ID=CX070077; Name=CX070077; organism=Citrus sinensis; type=EST; length=797bp
CCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTATAACAG
AGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGCAACAT
GAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCTACGAT
GGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCATCTCAG
GTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCTAATCG
TGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATGTGTTA
CTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGTATATA
GGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGACCCTAC
AGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAAATTAC
GTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGCACCCT
TTTGGCGACCGGCCCCTTGAACCATACGTGATGCCTCCTCGACGTGTTAG
AGAACTGCGACCTCGTGTTAGAAGAGCCATGATTAGAGAACAGAAAAAGG
CTGAGATGCAGCAGAGTAACAAGGATATGAGGAAAAACAGAAAGAAAGAA
GTTGAAGCAGAAGTGACTGCCTGAAGATCTGTTGGGGCTCTATTTGCTTT
GATAGGGAATACTCGTTTTCTGTATGTAACCCAAACAATCCGGGCATTGT
CTGTTACATGTTGGAATGGCAGTCTAGCATATTCTTTGGTTTTGAAA
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