CX070077

Overview
NameCX070077
Unique NameCX070077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BACC3 (50S ribosomal protein L13 OS=Bacillus cereus (strain 03BB102) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BACC1 (50S ribosomal protein L13 OS=Bacillus cereus (strain ATCC 10987) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BACC0 (50S ribosomal protein L13 OS=Bacillus cereus (strain AH820) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BACAN (50S ribosomal protein L13 OS=Bacillus anthracis GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BACAH (50S ribosomal protein L13 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BACAC (50S ribosomal protein L13 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_BACAA (50S ribosomal protein L13 OS=Bacillus anthracis (strain A0248) GN=rplM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD  I++NA+ I +TG KL +K+YY HT + G LK+RT  E     P + +  A+  MLP+            ++ G+EHP   +  E Y
Sbjct:   15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKIYYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQAQKPEVY 141          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_TRIEI (50S ribosomal protein L13 OS=Trichodesmium erythraeum (strain IMS101) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.257e-24
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  132 NLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            ++EG +W V DA+GQ LGRLA+ +A +++GK+KPTY P+ D GD  IV+NA+ + VTG+K   K+Y  H+G  G +K     +   R P   I +AV  MLP+N           ++PGS HP
Sbjct:   10 DIEGKKWYVIDAEGQRLGRLATAIAMIIRGKNKPTYTPHMDTGDFVIVVNAEKVTVTGKKSSQKLYRRHSGRPGGMKTEVFSKLQARLPQRIIEEAVFGMLPKNSLGRKLHNKLKVYPGSNHP 132          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_MYCLE (50S ribosomal protein L13 OS=Mycobacterium leprae GN=rplM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.257e-24
Identity = 51/126 (40.48%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            W V DA   VLGRLA+  AT+++GK KPT+APN D GD  IV+NA  + ++G K+++K+ Y H+GY G L++RT+ E M++ P   + KA++ MLP+N           ++ G +HP   +   P+
Sbjct:   15 WYVIDATDVVLGRLAAVAATLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKVQHKMVYRHSGYPGGLRKRTIGELMQKHPDRVVEKAIVGMLPKNKLSRQIQRKLRVYAGPDHPHSAQQPVPF 140          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_MYCLB (50S ribosomal protein L13 OS=Mycobacterium leprae (strain Br4923) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.257e-24
Identity = 51/126 (40.48%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            W V DA   VLGRLA+  AT+++GK KPT+APN D GD  IV+NA  + ++G K+++K+ Y H+GY G L++RT+ E M++ P   + KA++ MLP+N           ++ G +HP   +   P+
Sbjct:   15 WYVIDATDVVLGRLAAVAATLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKVQHKMVYRHSGYPGGLRKRTIGELMQKHPDRVVEKAIVGMLPKNKLSRQIQRKLRVYAGPDHPHSAQQPVPF 140          
The following BLAST results are available for this feature:
BLAST of CX070077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_BACC36.322e-2441.7350S ribosomal protein L13 OS=Bacillus cereus (stra... [more]
RL13_BACC16.322e-2441.7350S ribosomal protein L13 OS=Bacillus cereus (stra... [more]
RL13_BACC06.322e-2441.7350S ribosomal protein L13 OS=Bacillus cereus (stra... [more]
RL13_BACAN6.322e-2441.7350S ribosomal protein L13 OS=Bacillus anthracis GN... [more]
RL13_BACAH6.322e-2441.7350S ribosomal protein L13 OS=Bacillus thuringiensi... [more]
RL13_BACAC6.322e-2441.7350S ribosomal protein L13 OS=Bacillus anthracis (s... [more]
RL13_BACAA6.322e-2441.7350S ribosomal protein L13 OS=Bacillus anthracis (s... [more]
RL13_TRIEI8.257e-2442.2850S ribosomal protein L13 OS=Trichodesmium erythra... [more]
RL13_MYCLE8.257e-2440.4850S ribosomal protein L13 OS=Mycobacterium leprae ... [more]
RL13_MYCLB8.257e-2440.4850S ribosomal protein L13 OS=Mycobacterium leprae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070077 ID=CX070077; Name=CX070077; organism=Citrus sinensis; type=EST; length=797bp
CCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTATAACAG
AGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGCAACAT
GAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCTACGAT
GGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCATCTCAG
GTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCTAATCG
TGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATGTGTTA
CTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGTATATA
GGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGACCCTAC
AGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAAATTAC
GTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGCACCCT
TTTGGCGACCGGCCCCTTGAACCATACGTGATGCCTCCTCGACGTGTTAG
AGAACTGCGACCTCGTGTTAGAAGAGCCATGATTAGAGAACAGAAAAAGG
CTGAGATGCAGCAGAGTAACAAGGATATGAGGAAAAACAGAAAGAAAGAA
GTTGAAGCAGAAGTGACTGCCTGAAGATCTGTTGGGGCTCTATTTGCTTT
GATAGGGAATACTCGTTTTCTGTATGTAACCCAAACAATCCGGGCATTGT
CTGTTACATGTTGGAATGGCAGTCTAGCATATTCTTTGGTTTTGAAA
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