CX070077

Overview
NameCX070077
Unique NameCX070077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070077_ssr639 microsatellite CX070077_ssr639:639..650. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10629 contig Csv1_Contig10629:229..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_ACIF5 (50S ribosomal protein L13 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.408e-23
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEP 524
            W V DA  +VLGRL+ ++A  ++GK KP Y P+ D GD  +V+NA  I VTG K K+K+YY HTGY+G+LK  + ++  E  P   I  AV  MLP+N           ++ GSEHP   +  +P
Sbjct:   15 WFVVDATDKVLGRLSVELAKRLRGKHKPEYTPHADTGDYIVVINADKIAVTGNKAKDKIYYHHTGYVGNLKSASFEKMKETHPERIIELAVKGMLPKNPLGRAMFKKLKVYTGSEHPHSAQQPQP 139          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_ACIF2 (50S ribosomal protein L13 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.408e-23
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEP 524
            W V DA  +VLGRL+ ++A  ++GK KP Y P+ D GD  +V+NA  I VTG K K+K+YY HTGY+G+LK  + ++  E  P   I  AV  MLP+N           ++ GSEHP   +  +P
Sbjct:   15 WFVVDATDKVLGRLSVELAKRLRGKHKPEYTPHADTGDYIVVINADKIAVTGNKAKDKIYYHHTGYVGNLKSASFEKMKETHPERIIELAVKGMLPKNPLGRAMFKKLKVYTGSEHPHSAQQPQP 139          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_THEFY (50S ribosomal protein L13 OS=Thermobifida fusca (strain YX) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 56/127 (44.09%), Postives = 76/127 (59.84%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527
            +W V DA   VLGRLAS+VAT+++GK KP YAP+ D GD  IV+NA  + +TG+KL+ K  Y H+GY G L+     E M ++P  A+ KAV  MLP+N           ++ G EHP   +   PY
Sbjct:   14 QWHVIDASDVVLGRLASRVATLLRGKHKPYYAPHVDTGDYVIVVNADKVVLTGKKLEQKRAYRHSGYPGGLRSIPYSELMAKNPARAVEKAVKGMLPKNSLGRRMAKKLKVYAGPEHPHQAQKPVPY 140          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_RHISN (50S ribosomal protein L13 OS=Rhizobium sp. (strain NGR234) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            +W + DA+G V+GRLAS +A  ++GK K T+ P+ DDGD  IV+NA+   +TG+K  +K YYWHTGY G +KERT ++ +E R P   I KAV RM+PR            ++ G+ HP
Sbjct:   14 KWILIDAEGLVVGRLASIIANRLRGKHKATFTPHVDDGDNVIVINAEKAVLTGKKYTDKKYYWHTGYPGGIKERTARQIIEGRFPERVIEKAVERMVPRGPLGRRQMKNLRVYAGTNHP 132          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_MYCMM (50S ribosomal protein L13 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 51/117 (43.59%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            W V DA   VLGRLA   A +++GK KPT+APN D GD  IV+NA  + ++  KL+NK+ Y H+GY G L++R++ E ME+ P   + KA++ MLP+N           ++ G EHP
Sbjct:   15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISNEKLRNKMAYSHSGYPGGLRKRSIGELMEKHPDRVVEKAIVGMLPKNKLSRQIQSKLRVYAGPEHP 131          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_HAEPS (50S ribosomal protein L13 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 497
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA+ + VTG+K  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ G+EH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGKKETDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEH 130          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_GEOSM (50S ribosomal protein L13 OS=Geobacter sp. (strain M21) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            W + D   +VLGR+A+++A V++GK+KPT+ P+ D GD  IV+NA+ I +TGRKL +KVYY H+ Y G LKE T  + +++ P E ++KAV  MLP+N           I+ G  HP
Sbjct:   15 WYLVDVDNKVLGRVATEIANVLRGKNKPTFTPSVDTGDFVIVVNAEKIALTGRKLADKVYYSHSSYPGGLKEITAGKLLDKKPEELLKKAVKGMLPKNKLARHMLKKLKIYSGGAHP 131          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_GEOLS (50S ribosomal protein L13 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 3
Query:  147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            +W V DA+  VLGRLA+QVA V++GK KP Y P+ D GD  +++NA+ I +TG K+ +KVYY H+G+ G +K  T    + + P E IRKAV  MLP+N           ++ G  HP
Sbjct:   14 QWFVVDAENVVLGRLATQVANVLRGKHKPMYTPSVDTGDFVVIVNAEKIALTGNKMADKVYYSHSGFPGGIKSSTAAAMLSKKPEELIRKAVKGMLPKNKLARHMLKKLKVYSGGAHP 131          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_DESDG (50S ribosomal protein L13 OS=Desulfovibrio desulfuricans (strain G20) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500
            W V DA+ ++LGRLA+Q+A  ++GK KP +AP+ D+GD  +V+N + I VTG+KL +K YY ++GY+G L+E+TL   +   P  A+  AV  MLPRN           ++ GSEHP
Sbjct:   15 WYVVDAEDKILGRLAAQIAHRLRGKHKPEFAPHVDNGDFIVVVNCEKIAVTGKKLSDKKYYRYSGYVGGLREQTLANVLATKPERALINAVKGMLPRNRLGRAMLKKLKVYAGSEHP 131          
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_ACTPJ (50S ribosomal protein L13 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rplM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 497
            W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IV+NA+ + VTG+K  +K+YYWHTGY+G +K+ T KE + R P   I  AV  MLP+            ++ G+EH
Sbjct:   15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGKKETDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGREMFRKLKVYAGNEH 130          
The following BLAST results are available for this feature:
BLAST of CX070077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_ACIF51.408e-2342.4050S ribosomal protein L13 OS=Acidithiobacillus fer... [more]
RL13_ACIF21.408e-2342.4050S ribosomal protein L13 OS=Acidithiobacillus fer... [more]
RL13_THEFY1.840e-2344.0950S ribosomal protein L13 OS=Thermobifida fusca (s... [more]
RL13_RHISN1.840e-2345.3850S ribosomal protein L13 OS=Rhizobium sp. (strain... [more]
RL13_MYCMM1.840e-2343.5950S ribosomal protein L13 OS=Mycobacterium marinum... [more]
RL13_HAEPS1.840e-2343.9750S ribosomal protein L13 OS=Haemophilus parasuis ... [more]
RL13_GEOSM1.840e-2344.4450S ribosomal protein L13 OS=Geobacter sp. (strain... [more]
RL13_GEOLS1.840e-2344.0750S ribosomal protein L13 OS=Geobacter lovleyi (st... [more]
RL13_DESDG1.840e-2344.4450S ribosomal protein L13 OS=Desulfovibrio desulfu... [more]
RL13_ACTPJ1.840e-2343.9750S ribosomal protein L13 OS=Actinobacillus pleuro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070077 ID=CX070077; Name=CX070077; organism=Citrus sinensis; type=EST; length=797bp
CCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTATAACAG
AGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGCAACAT
GAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCTACGAT
GGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCATCTCAG
GTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCTAATCG
TGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATGTGTTA
CTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGTATATA
GGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGACCCTAC
AGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAAATTAC
GTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGCACCCT
TTTGGCGACCGGCCCCTTGAACCATACGTGATGCCTCCTCGACGTGTTAG
AGAACTGCGACCTCGTGTTAGAAGAGCCATGATTAGAGAACAGAAAAAGG
CTGAGATGCAGCAGAGTAACAAGGATATGAGGAAAAACAGAAAGAAAGAA
GTTGAAGCAGAAGTGACTGCCTGAAGATCTGTTGGGGCTCTATTTGCTTT
GATAGGGAATACTCGTTTTCTGTATGTAACCCAAACAATCCGGGCATTGT
CTGTTACATGTTGGAATGGCAGTCTAGCATATTCTTTGGTTTTGAAA
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