CX070077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_ACIF5 (50S ribosomal protein L13 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplM PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.408e-23 Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 3 Query: 150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEP 524 W V DA +VLGRL+ ++A ++GK KP Y P+ D GD +V+NA I VTG K K+K+YY HTGY+G+LK + ++ E P I AV MLP+N ++ GSEHP + +P Sbjct: 15 WFVVDATDKVLGRLSVELAKRLRGKHKPEYTPHADTGDYIVVINADKIAVTGNKAKDKIYYHHTGYVGNLKSASFEKMKETHPERIIELAVKGMLPKNPLGRAMFKKLKVYTGSEHPHSAQQPQP 139
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_ACIF2 (50S ribosomal protein L13 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplM PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.408e-23 Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 3 Query: 150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEP 524 W V DA +VLGRL+ ++A ++GK KP Y P+ D GD +V+NA I VTG K K+K+YY HTGY+G+LK + ++ E P I AV MLP+N ++ GSEHP + +P Sbjct: 15 WFVVDATDKVLGRLSVELAKRLRGKHKPEYTPHADTGDYIVVINADKIAVTGNKAKDKIYYHHTGYVGNLKSASFEKMKETHPERIIELAVKGMLPKNPLGRAMFKKLKVYTGSEHPHSAQQPQP 139
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_THEFY (50S ribosomal protein L13 OS=Thermobifida fusca (strain YX) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23 Identity = 56/127 (44.09%), Postives = 76/127 (59.84%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGDRPLEPY 527 +W V DA VLGRLAS+VAT+++GK KP YAP+ D GD IV+NA + +TG+KL+ K Y H+GY G L+ E M ++P A+ KAV MLP+N ++ G EHP + PY Sbjct: 14 QWHVIDASDVVLGRLASRVATLLRGKHKPYYAPHVDTGDYVIVVNADKVVLTGKKLEQKRAYRHSGYPGGLRSIPYSELMAKNPARAVEKAVKGMLPKNSLGRRMAKKLKVYAGPEHPHQAQKPVPY 140
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_RHISN (50S ribosomal protein L13 OS=Rhizobium sp. (strain NGR234) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23 Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 +W + DA+G V+GRLAS +A ++GK K T+ P+ DDGD IV+NA+ +TG+K +K YYWHTGY G +KERT ++ +E R P I KAV RM+PR ++ G+ HP Sbjct: 14 KWILIDAEGLVVGRLASIIANRLRGKHKATFTPHVDDGDNVIVINAEKAVLTGKKYTDKKYYWHTGYPGGIKERTARQIIEGRFPERVIEKAVERMVPRGPLGRRQMKNLRVYAGTNHP 132
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_MYCMM (50S ribosomal protein L13 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23 Identity = 51/117 (43.59%), Postives = 73/117 (62.39%), Query Frame = 3 Query: 150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++ KL+NK+ Y H+GY G L++R++ E ME+ P + KA++ MLP+N ++ G EHP Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISNEKLRNKMAYSHSGYPGGLRKRSIGELMEKHPDRVVEKAIVGMLPKNKLSRQIQSKLRVYAGPEHP 131
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_HAEPS (50S ribosomal protein L13 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23 Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 3 Query: 150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 497 W V DA G+ LGRLA+++A ++GK K Y P+ D GD IV+NA+ + VTG+K +K+YYWHTGY+G +K+ T KE + R P I AV MLP+ ++ G+EH Sbjct: 15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGKKETDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEH 130
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_GEOSM (50S ribosomal protein L13 OS=Geobacter sp. (strain M21) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23 Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 3 Query: 150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 W + D +VLGR+A+++A V++GK+KPT+ P+ D GD IV+NA+ I +TGRKL +KVYY H+ Y G LKE T + +++ P E ++KAV MLP+N I+ G HP Sbjct: 15 WYLVDVDNKVLGRVATEIANVLRGKNKPTFTPSVDTGDFVIVVNAEKIALTGRKLADKVYYSHSSYPGGLKEITAGKLLDKKPEELLKKAVKGMLPKNKLARHMLKKLKIYSGGAHP 131
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_GEOLS (50S ribosomal protein L13 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23 Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 3 Query: 147 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 +W V DA+ VLGRLA+QVA V++GK KP Y P+ D GD +++NA+ I +TG K+ +KVYY H+G+ G +K T + + P E IRKAV MLP+N ++ G HP Sbjct: 14 QWFVVDAENVVLGRLATQVANVLRGKHKPMYTPSVDTGDFVVIVNAEKIALTGNKMADKVYYSHSGFPGGIKSSTAAAMLSKKPEELIRKAVKGMLPKNKLARHMLKKLKVYSGGAHP 131
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_DESDG (50S ribosomal protein L13 OS=Desulfovibrio desulfuricans (strain G20) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23 Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 3 Query: 150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 500 W V DA+ ++LGRLA+Q+A ++GK KP +AP+ D+GD +V+N + I VTG+KL +K YY ++GY+G L+E+TL + P A+ AV MLPRN ++ GSEHP Sbjct: 15 WYVVDAEDKILGRLAAQIAHRLRGKHKPEFAPHVDNGDFIVVVNCEKIAVTGKKLSDKKYYRYSGYVGGLREQTLANVLATKPERALINAVKGMLPRNRLGRAMLKKLKVYAGSEHP 131
BLAST of CX070077 vs. ExPASy Swiss-Prot
Match: RL13_ACTPJ (50S ribosomal protein L13 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rplM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23 Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 3 Query: 150 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 497 W V DA G+ LGRLA+++A ++GK K Y P+ D GD IV+NA+ + VTG+K +K+YYWHTGY+G +K+ T KE + R P I AV MLP+ ++ G+EH Sbjct: 15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVINAEKVAVTGKKETDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGREMFRKLKVYAGNEH 130 The following BLAST results are available for this feature:
BLAST of CX070077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX070077 ID=CX070077; Name=CX070077; organism=Citrus sinensis; type=EST; length=797bpback to top |