CX070057

Overview
NameCX070057
Unique NameCX070057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070057_ssr7 microsatellite CX070057_ssr7:7..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11542 contig Csv1_Contig11542:23..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: ENPL_BOVIN (Endoplasmin OS=Bos taurus GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.914e-30
Identity = 64/114 (56.14%), Postives = 85/114 (74.56%), Query Frame = 3
Query:   87 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 428
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: ENPL_RAT (Endoplasmin OS=Rattus norvegicus GN=Hsp90b1 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 8.718e-30
Identity = 63/114 (55.26%), Postives = 85/114 (74.56%), Query Frame = 3
Query:   87 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 428
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL + I  D+  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDREKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: ENPL_HORVU (Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 8.718e-30
Identity = 72/138 (52.17%), Postives = 96/138 (69.57%), Query Frame = 3
Query:   57 LRRDRFLVERQVVSMASET-----ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 449
            L  D  +V+R+  S++ +T     E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF +LTDK  +      +L I I  DK N  LSI D G+GMTK DL+ NLGTIA+SGT  F+E +  G D++
Sbjct:   54 LSTDSEVVQRESESISRKTLRNSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEVMGEGDTAKLEIQIKLDKENKILSIRDRGVGMTKEDLIKNLGTIAKSGTSAFVEKMQTGGDLN 191          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: ENPL_ARATH (Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.537e-29
Identity = 73/138 (52.90%), Postives = 94/138 (68.12%), Query Frame = 3
Query:   57 LRRDRFLVERQVVSMASET-----ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 449
            L  D  +V R+  SM+ +T     E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF +LTDK  L      +L I I  DK    LSI D GIGMTK DL+ NLGTIA+SGT  F+E + +  D++
Sbjct:   53 LSTDSDVVHRESESMSKKTLRSNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKDVLGEGDTAKLEIQIKLDKAKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQSSGDLN 190          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_THICR (Chaperone protein htpG OS=Thiomicrospira crunogena (strain XCL-2) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.313e-29
Identity = 62/106 (58.49%), Postives = 85/106 (80.19%), Query Frame = 3
Query:  105 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 422
            S TET AFQ E+NQLL L+I+  YSNKEIFLREL+SN+SDALDK+RFES+++ +  + + EL I +  DK   ++SIID+GIGMT+ +++ N+GTIA SGTK+F+E
Sbjct:    2 SHTETHAFQTEVNQLLKLMIHALYSNKEIFLRELVSNASDALDKLRFESVSNDALSEGESELAIQVGFDKEARTVSIIDNGIGMTRDEVIANIGTIANSGTKKFLE 107          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: ENPL_DICDI (Endoplasmin homolog OS=Dictyostelium discoideum GN=grp94 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 3.313e-29
Identity = 69/125 (55.20%), Postives = 89/125 (71.20%), Query Frame = 3
Query:   81 ERQVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL--DAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 449
            E +   +  + E F FQ E+N+L+++IIN+ YS KEIFLRELISN+SDALDKIRF +LT+   L    Q  L IHI  DK NN L I D G+GMTK +LV NLGTIA+SGTKEF++ ++  A+ S
Sbjct:   39 EAEAKLIEEKGEKFTFQTEVNKLMNIIINSLYSKKEIFLRELISNASDALDKIRFLALTNADLLGEGEQSNLDIHIKIDKANNVLHITDRGVGMTKDELVRNLGTIAQSGTKEFIKKVSDSAESS 163          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_NITEU (Chaperone protein htpG OS=Nitrosomonas europaea GN=htpG PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.651e-29
Identity = 61/109 (55.96%), Postives = 85/109 (77.98%), Query Frame = 3
Query:  102 ASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 428
            A   E   FQAE NQLL L+I++ YSNKEIFLRELISN+SDA DK+RFE L+D +  ++ P+L I I  DK   +++IID+GIGM++ +++NN+GTIA+SGT+EF ++L
Sbjct:    4 AENIEHLNFQAEANQLLKLMIHSLYSNKEIFLRELISNASDAADKLRFEGLSDAALYESDPDLKIRIAYDKEARTITIIDNGIGMSRQEVINNIGTIAKSGTREFFDSL 112          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: ENPL_CATRO (Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.381e-29
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = 3
Query:   57 LRRDRFLVERQVVSMA-----SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 449
            L  D  + +R+  SM+     S+ E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF +LTDK  L      +L I I  DK    LSI D GIGMTK DL+ NLGTIA+SGT  F+E +    D++
Sbjct:   54 LSTDSDVAKREAESMSMRNLRSDAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEILGEGDTAKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLN 191          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_HALHL (Chaperone protein htpG OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=htpG PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.644e-28
Identity = 59/112 (52.68%), Postives = 87/112 (77.68%), Query Frame = 3
Query:   93 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 428
            +S  +++ET  FQAE+ QLLSL+I++ YSN+E+FLRELISN+SDA+DK+RFE+L  +S  +  PEL I +  D    ++++ID+GIGM++ D++ NLGTIA SGT+ F+E L
Sbjct:    1 MSADTQSETLEFQAEVQQLLSLMIHSVYSNREVFLRELISNASDAIDKLRFEALQQESLYEDDPELKIRVEADPEARTVTVIDNGIGMSREDVIENLGTIAHSGTRRFLEQL 112          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_ALHEH (Chaperone protein htpG OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.784e-28
Identity = 59/105 (56.19%), Postives = 83/105 (79.05%), Query Frame = 3
Query:  114 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 428
            ET  FQAE+ QLL L+I++ YSNK+IFLRELISN+SDA+DK+RF+SL D+S L+ + +L I +  DK   ++++ D+GIGMT+ ++  NLGTIARSGTK F++ L
Sbjct:    8 ETLEFQAEVQQLLHLMIHSLYSNKDIFLRELISNASDAIDKLRFQSLQDESLLEGEGDLRIRVSVDKDARTITVADNGIGMTRDEVAENLGTIARSGTKAFLDQL 112          
The following BLAST results are available for this feature:
BLAST of CX070057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
ENPL_BOVIN3.914e-3056.14Endoplasmin OS=Bos taurus GN=HSP90B1 PE=2 SV=1[more]
ENPL_RAT8.718e-3055.26Endoplasmin OS=Rattus norvegicus GN=Hsp90b1 PE=1 S... [more]
ENPL_HORVU8.718e-3052.17Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1[more]
ENPL_ARATH2.537e-2952.90Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD... [more]
HTPG_THICR3.313e-2958.49Chaperone protein htpG OS=Thiomicrospira crunogena... [more]
ENPL_DICDI3.313e-2955.20Endoplasmin homolog OS=Dictyostelium discoideum GN... [more]
HTPG_NITEU5.651e-2955.96Chaperone protein htpG OS=Nitrosomonas europaea GN... [more]
ENPL_CATRO7.381e-2952.17Endoplasmin homolog OS=Catharanthus roseus GN=HSP9... [more]
HTPG_HALHL1.644e-2852.68Chaperone protein htpG OS=Halorhodospira halophila... [more]
HTPG_ALHEH4.784e-2856.19Chaperone protein htpG OS=Alkalilimnicola ehrliche... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_14E05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14E05-I10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070057 ID=CX070057; Name=CX070057; organism=Citrus sinensis; type=EST; length=449bp
GTTTTTTCTCTCTCTCTCTCTGTCTCTCGTTCGCTTCCAAAAACCCTTGT
TTATAACTCAGAAGAGATCGTTTTTTGGTTGAACGGCAGGTCGTTTCGAT
GGCATCAGAGACAGAGACGTTTGCCTTTCAGGCTGAGATCAACCAGTTGT
TGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGATCTTTCTTCGT
GAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATCAGATTTGAAAG
CTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCTTTTCATTCACA
TTATCCCTGATAAGACCAACAACTCATTGTCTATTATTGACAGTGGTATT
GGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACAATTGCTAGGTC
TGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGCGGATGTGAGC
back to top