CX070057

Overview
NameCX070057
Unique NameCX070057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070057_ssr7 microsatellite CX070057_ssr7:7..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11542 contig Csv1_Contig11542:23..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_PELPD (Chaperone protein htpG OS=Pelobacter propionicus (strain DSM 2379) GN=htpG PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.160e-28
Identity = 60/104 (57.69%), Postives = 82/104 (78.85%), Query Frame = 3
Query:  117 TFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 428
            T  FQ E+ QLL L+I++ YSN++IFLRELISNSSDA+DKIRFE+ +++  L+   +  I +IPDK   +L+I+D+GIGMT A++  N+GTIARSGTK FM+AL
Sbjct:    5 TKQFQTEVKQLLDLVIHSLYSNRDIFLRELISNSSDAIDKIRFEAHSNEELLEGNSDWKIKLIPDKDAGTLTILDNGIGMTMAEVEENIGTIARSGTKAFMQAL 108          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_THIDA (Chaperone protein htpG OS=Thiobacillus denitrificans (strain ATCC 25259) GN=htpG PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.066e-27
Identity = 59/113 (52.21%), Postives = 86/113 (76.11%), Query Frame = 3
Query:   93 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 431
            +S  S  ET  FQAE+ QLL L+I++ YSNK+IFLRELISN+SDA DK+RFE+L+D +  +  PEL I I  D+   +L+I D+GIGM++ ++++++GTIA+SGT+EF   L+
Sbjct:    1 MSATSSKETLGFQAEVKQLLQLMIHSLYSNKDIFLRELISNASDAADKLRFEALSDAALFENDPELKIRIAFDRDARTLTISDNGIGMSRQEVIDHIGTIAKSGTREFFSQLS 113          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_MAGSM (Chaperone protein htpG OS=Magnetococcus sp. (strain MC-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.066e-27
Identity = 61/112 (54.46%), Postives = 85/112 (75.89%), Query Frame = 3
Query:   93 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 428
            +S A+ETE   FQ E++QLL L+I+  YSNKEIFLRELISN+SDA DK+RF  L+D S  +   EL I +  DK   + SI+D+GIGM++ ++++N+GTIA+SGTKEF ++L
Sbjct:    1 MSAATETEVREFQTEVSQLLDLMIHALYSNKEIFLRELISNASDANDKLRFAGLSDDSLFEGDSELTIKLEFDKEAGTFSIMDNGIGMSRDEVISNIGTIAKSGTKEFFKSL 112          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_RUTMC (Chaperone protein htpG OS=Ruthia magnifica subsp. Calyptogena magnifica GN=htpG PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.392e-27
Identity = 57/108 (52.78%), Postives = 88/108 (81.48%), Query Frame = 3
Query:  105 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 428
            +E +   FQ E++QLL L+I++ YSNKEIFLREL+SNSSDA+DK++F+SL+D + ++ + EL IHI  +K  ++++I D+GIGMT+A++  N+GTIA SGTK+F+++L
Sbjct:    2 AEKQIHTFQTEVSQLLDLMIHSLYSNKEIFLRELVSNSSDAVDKLKFKSLSDDTLIEGKEELQIHINTNKDASTITITDNGIGMTEAEVNKNIGTIANSGTKKFLKSL 109          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_EHRRW (Chaperone protein htpG OS=Ehrlichia ruminantium (strain Welgevonden) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.392e-27
Identity = 59/110 (53.64%), Postives = 85/110 (77.27%), Query Frame = 3
Query:  111 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 440
            +E   F AE+ ++L L+I++ Y+NK+IFLRELISN+SDA DK+R++SL+++  +DA  EL I I  DK  N L I D+GIGM + DL+NNLGTIA SGT++F++A+ +GA
Sbjct:    7 SERLKFDAEVGKVLKLVIHSLYTNKDIFLRELISNASDACDKLRYQSLSNQDLMDAGSELKIVISVDKDKNRLYISDNGIGMNREDLINNLGTIAHSGTQKFLDAINSGA 116          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_EHRRG (Chaperone protein htpG OS=Ehrlichia ruminantium (strain Gardel) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.392e-27
Identity = 59/110 (53.64%), Postives = 85/110 (77.27%), Query Frame = 3
Query:  111 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 440
            +E   F AE+ ++L L+I++ Y+NK+IFLRELISN+SDA DK+R++SL+++  +DA  EL I I  DK  N L I D+GIGM + DL+NNLGTIA SGT++F++A+ +GA
Sbjct:    7 SERLKFDAEVGKVLKLVIHSLYTNKDIFLRELISNASDACDKLRYQSLSNQDLMDAGSELKIVISVDKDKNRLYISDNGIGMNREDLINNLGTIAHSGTQKFLDAINSGA 116          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_RALEJ (Chaperone protein htpG OS=Ralstonia eutropha (strain JMP134) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.818e-27
Identity = 60/111 (54.05%), Postives = 83/111 (74.77%), Query Frame = 3
Query:   99 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 431
            M++  ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE++ + S L+   +L I I  D    +L I D+GIGM++ + + NLGTIARSGTKEF + L+
Sbjct:    1 MSAPHETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEADTAARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQQLS 111          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_RALEH (Chaperone protein htpG OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.818e-27
Identity = 60/111 (54.05%), Postives = 84/111 (75.68%), Query Frame = 3
Query:   99 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 431
            M +  ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE++ + S L+   +L I I  D    +L+I D+GIGM++ + ++NLGTIARSGTKEF + L+
Sbjct:    1 MTAPHETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEADAKARTLTITDNGIGMSRDEAIHNLGTIARSGTKEFFQQLS 111          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_NITOC (Chaperone protein htpG OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.818e-27
Identity = 59/113 (52.21%), Postives = 84/113 (74.34%), Query Frame = 3
Query:   93 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 431
            +++AS  ET  FQ E+ QLL+L+I+  YSNKEIFLRELISN +DA DK+RFE+LTD +  +    L I +  DK   +L+I D+GIGM + ++V N+GTIA+SGT+ F+E+L+
Sbjct:    1 MTVASHKETLGFQTEVKQLLNLMIHALYSNKEIFLRELISNGADAADKLRFEALTDDALYEDDSALHIRLSYDKDKRTLTIADNGIGMGRQEVVENIGTIAKSGTRAFLESLS 113          
BLAST of CX070057 vs. ExPASy Swiss-Prot
Match: HTPG_METFK (Chaperone protein htpG OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=htpG1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.374e-27
Identity = 61/113 (53.98%), Postives = 86/113 (76.11%), Query Frame = 3
Query:   99 MASET---ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 428
            M++ET   ET  FQAE+ QLL L+I++ YSNKEI LRELISN+SDA DK+RFE+L D S      +L I +  DK   +++I D+GIGM++ +++NN+GTIA+SGTKEF+++L
Sbjct:    1 MSTETLQKETLGFQAEVKQLLQLMIHSLYSNKEIVLRELISNASDAADKLRFEALADNSLYGNDSDLKIRVSFDKQARTITISDNGIGMSREEVINNIGTIAKSGTKEFLQSL 113          
The following BLAST results are available for this feature:
BLAST of CX070057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_PELPD8.160e-2857.69Chaperone protein htpG OS=Pelobacter propionicus (... [more]
HTPG_THIDA1.066e-2752.21Chaperone protein htpG OS=Thiobacillus denitrifica... [more]
HTPG_MAGSM1.066e-2754.46Chaperone protein htpG OS=Magnetococcus sp. (strai... [more]
HTPG_RUTMC1.392e-2752.78Chaperone protein htpG OS=Ruthia magnifica subsp. ... [more]
HTPG_EHRRW1.392e-2753.64Chaperone protein htpG OS=Ehrlichia ruminantium (s... [more]
HTPG_EHRRG1.392e-2753.64Chaperone protein htpG OS=Ehrlichia ruminantium (s... [more]
HTPG_RALEJ1.818e-2754.05Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]
HTPG_RALEH1.818e-2754.05Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]
HTPG_NITOC1.818e-2752.21Chaperone protein htpG OS=Nitrosococcus oceani (st... [more]
HTPG_METFK2.374e-2753.98Chaperone protein htpG OS=Methylobacillus flagella... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14E05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14E05-I10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070057 ID=CX070057; Name=CX070057; organism=Citrus sinensis; type=EST; length=449bp
GTTTTTTCTCTCTCTCTCTCTGTCTCTCGTTCGCTTCCAAAAACCCTTGT
TTATAACTCAGAAGAGATCGTTTTTTGGTTGAACGGCAGGTCGTTTCGAT
GGCATCAGAGACAGAGACGTTTGCCTTTCAGGCTGAGATCAACCAGTTGT
TGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGATCTTTCTTCGT
GAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATCAGATTTGAAAG
CTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCTTTTCATTCACA
TTATCCCTGATAAGACCAACAACTCATTGTCTATTATTGACAGTGGTATT
GGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACAATTGCTAGGTC
TGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGCGGATGTGAGC
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