CX070056

Overview
NameCX070056
Unique NameCX070056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP82_TOBAC (Heat shock protein 82 (Fragment) OS=Nicotiana tabacum GN=HSP82 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.185e-62
Identity = 135/213 (63.38%), Postives = 147/213 (69.01%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXL-CKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSI-EEDAGDADADMPPLEDAADDAEGSKMEEVD 836
            VLYMVDAIDEYAVGQLKE++GKKLVSAT                           CK+IKD+LG              SPCCLVTGEYGWTANMERIMKAQALRD+SM+ YMSSKKTMEINP+N IMEELRKRA+ADKNDKSVKD          LTSGFSLDDPNTF  RIHRMLKLGLSI EE+    DADMP LE+  ++   SKMEEVD
Sbjct:  290 VLYMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDDSEEEKKKKEEKKKSFENLCKIIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFAARIHRMLKLGLSIDEEEEAVEDADMPALEETGEE---SKMEEVD 499          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HS90A_PIG (Heat shock protein HSP 90-alpha OS=Sus scrofa GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 7.289e-50
Identity = 111/218 (50.92%), Postives = 135/218 (61.93%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 836
            V+YM++ IDEY V QLKEFEGK LVS T                         LCK++KD+L               SPCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E LR++A+ADKNDKSVKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   AD        +MPPLE    D + S+MEEVD
Sbjct:  519 VIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLE---GDDDTSRMEEVD 733          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HS90A_PANTR (Heat shock protein HSP 90-alpha OS=Pan troglodytes GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.289e-50
Identity = 111/218 (50.92%), Postives = 135/218 (61.93%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 836
            V+YM++ IDEY V QLKEFEGK LVS T                         LCK++KD+L               SPCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E LR++A+ADKNDKSVKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   AD        +MPPLE    D + S+MEEVD
Sbjct:  519 VIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLE---GDDDTSRMEEVD 733          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HS90A_MACFA (Heat shock protein HSP 90-alpha OS=Macaca fascicularis GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 7.289e-50
Identity = 111/218 (50.92%), Postives = 135/218 (61.93%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 836
            V+YM++ IDEY V QLKEFEGK LVS T                         LCK++KD+L               SPCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E LR++A+ADKNDKSVKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   AD        +MPPLE    D + S+MEEVD
Sbjct:  519 VIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLE---GDDDTSRMEEVD 733          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HS90A_HUMAN (Heat shock protein HSP 90-alpha OS=Homo sapiens GN=HSP90AA1 PE=1 SV=5)

HSP 1 Score: 197.593 bits (501), Expect = 7.289e-50
Identity = 111/218 (50.92%), Postives = 135/218 (61.93%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 836
            V+YM++ IDEY V QLKEFEGK LVS T                         LCK++KD+L               SPCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E LR++A+ADKNDKSVKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   AD        +MPPLE    D + S+MEEVD
Sbjct:  518 VIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLE---GDDDTSRMEEVD 732          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HS90A_BOVIN (Heat shock protein HSP 90-alpha OS=Bos taurus GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 7.289e-50
Identity = 111/218 (50.92%), Postives = 135/218 (61.93%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 836
            V+YM++ IDEY V QLKEFEGK LVS T                         LCK++KD+L               SPCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E LR++A+ADKNDKSVKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   AD        +MPPLE    D + S+MEEVD
Sbjct:  519 VIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLE---GDDDTSRMEEVD 733          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HS90B_DANRE (Heat shock protein HSP 90-beta OS=Danio rerio GN=hsp90ab1 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.624e-49
Identity = 110/220 (50.00%), Postives = 134/220 (60.91%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED---------AGDADADMPPLEDAADDAEGSKMEEVD 836
            VLYM + IDEY V QLK+F+GK LVS T                         LCK++K++L               SPCC+VT  YGWTANMERIMKAQALRDNS  GYM +KK +EINP++PIME LR++A+ADKNDK+VKD          L+SGFSLDDP T  NRI+RM+KLGL I+ED         +  A  D+PPLE    D + S+MEEVD
Sbjct:  509 VLYMTEPIDEYCVQQLKDFDGKSLVSVTKEGLELPEDEDEKKKMEEDKAKFENLCKLMKEILDKKVEKVTVSNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIMETLRQKAEADKNDKAVKDLVILLFETALLSSGFSLDDPQTHSNRIYRMIKLGLGIDEDEDVPVEEPSSAAAPEDIPPLE---GDDDASRMEEVD 725          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HS90A_RAT (Heat shock protein HSP 90-alpha OS=Rattus norvegicus GN=Hsp90aa1 PE=1 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 2.121e-49
Identity = 110/218 (50.46%), Postives = 134/218 (61.47%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 836
            V+YM++ IDEY V QLKEFEGK LVS T                         LCK++KD+L               SPCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E LR++A+ADKNDKSVKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED    D        +MPPLE    D + S+MEEVD
Sbjct:  519 VIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEEMPPLE---GDDDTSRMEEVD 733          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HS90A_MOUSE (Heat shock protein HSP 90-alpha OS=Mus musculus GN=Hsp90aa1 PE=1 SV=4)

HSP 1 Score: 196.052 bits (497), Expect = 2.121e-49
Identity = 110/218 (50.46%), Postives = 134/218 (61.47%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 836
            V+YM++ IDEY V QLKEFEGK LVS T                         LCK++KD+L               SPCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E LR++A+ADKNDKSVKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED    D        +MPPLE    D + S+MEEVD
Sbjct:  519 VIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEEMPPLE---GDDDTSRMEEVD 733          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HS90A_CHICK (Heat shock protein HSP 90-alpha OS=Gallus gallus GN=HSP90AA1 PE=3 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 2.770e-49
Identity = 110/218 (50.46%), Postives = 135/218 (61.93%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 836
            V+YM++ IDEY V QLKEFEGK LVS T                         LCK++KD+L               SPCC+VT  YGWTANMERIMKAQALRDNS  GYM++KK +EINP++ I+E LR++A+ADKNDKSVKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   A+        +MPPLE    D + S+MEEVD
Sbjct:  514 VIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKAKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDTAAEEASPAVTEEMPPLE---GDDDTSRMEEVD 728          
The following BLAST results are available for this feature:
BLAST of CX070056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
HSP82_TOBAC2.185e-6263.38Heat shock protein 82 (Fragment) OS=Nicotiana taba... [more]
HS90A_PIG7.289e-5050.92Heat shock protein HSP 90-alpha OS=Sus scrofa GN=H... [more]
HS90A_PANTR7.289e-5050.92Heat shock protein HSP 90-alpha OS=Pan troglodytes... [more]
HS90A_MACFA7.289e-5050.92Heat shock protein HSP 90-alpha OS=Macaca fascicul... [more]
HS90A_HUMAN7.289e-5050.92Heat shock protein HSP 90-alpha OS=Homo sapiens GN... [more]
HS90A_BOVIN7.289e-5050.92Heat shock protein HSP 90-alpha OS=Bos taurus GN=H... [more]
HS90B_DANRE1.624e-4950.00Heat shock protein HSP 90-beta OS=Danio rerio GN=h... [more]
HS90A_RAT2.121e-4950.46Heat shock protein HSP 90-alpha OS=Rattus norvegic... [more]
HS90A_MOUSE2.121e-4950.46Heat shock protein HSP 90-alpha OS=Mus musculus GN... [more]
HS90A_CHICK2.770e-4950.46Heat shock protein HSP 90-alpha OS=Gallus gallus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_14E05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14E05-I10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070056 ID=CX070056; Name=CX070056; organism=Citrus sinensis; type=EST; length=836bp
CTTTTTTTTTTGATTCGGAAACAGCATACTTTTTAAGCATTTGCAAAACA
ATAAAACAAAACCTCCACCAAAGAGGGAAAATAAAAATATAAAAGCACTA
CTCCCACAGTACTACCACCACAGAACGCATAACAAAAAGAAACTACCTAG
TTAAAAGAGTTTCATGAAAAAAGACTACTATAGCAGACTATTATAGCTTC
TTAATCAACTTCCTCCATCTTGCTGCCCTCAGCATCGTCAGCAGCATCCT
CCAATGGTGGCATGTCAGCATCAGCATCACCAGCATCCTCCTCGATGCTC
AGCCCGAGTTTCAACATCCTGTGGATTCTGTTGCCGAAAGTGTTAGGGTC
ATCAAGGCTGAAACCAGAAGTGAGGAGAGCAGTCTCAAAGAGCAGAAGGA
CAAGGTCCTTCACAGACTTGTCATTCTTGTCAGCATCAGCCCTCTTCCTG
AGCTCCTCCATGATGGGGTTCTCCGGATTGATCTCCATGGTCTTCTTGCT
GGACATGTAACCAGCCATGCTGTTGTCTCTCAAGGCCTGAGCCTTCATGA
TCCTCTCCATGTTGGCTGTCCATCCATACTCACCAGTCACCAAACAGCAG
GGTGAGTCAACAACACGGTCAGACACCACAACCTTCTCGACCTTGTCACC
CAAAACATCCTTGATCACCTTGCAGAGACCCTCAAATTTCTCCTTCAAGG
TTTCCTTCTTCTTCTTCTCATCTTCACTCTCGTCAAGCTTGAGACCTTCT
TTGGTTGCTGAGACAAGCTTCTTTCCCTCAAACTCCTTGAGCTGACCAAC
AGCGTACTCATCTATGGCATCAACCATGTAGAGCAC
back to top