CX070056

Overview
NameCX070056
Unique NameCX070056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070056_ssr705 microsatellite CX070056_ssr705:705..716. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13133 contig Csv1_Contig13133:56..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP83_DROME (Heat shock protein 83 OS=Drosophila melanogaster GN=Hsp83 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.020e-43
Identity = 100/217 (46.08%), Postives = 130/217 (59.91%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED----AGDADA--DMPPLEDAADDAEGSKMEEVD 836
            V+YM + IDEY +  LKE++GK+LVS T                         LCK++K +L               SPCC+VT ++GW+ANMERIMKAQALRD +  GYM+ KK +EINP++PI+E LR++ADADKNDK+VKD          L+SGFSLD P    +RI+RM+KLGL I+ED      DA +  D P L +  +DA  S MEEVD
Sbjct:  503 VVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDESEKKKREEDKAKFESLCKLMKSILDNKVEKVVVSNRLVDSPCCIVTSQFGWSANMERIMKAQALRDTATMGYMAGKKQLEINPDHPIVETLRQKADADKNDKAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGIDEDEPMTTDDAQSAGDAPSLVEDTEDA--SHMEEVD 717          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP83_DROPS (Heat shock protein 83 OS=Drosophila pseudoobscura pseudoobscura GN=Hsp83 PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.739e-43
Identity = 98/217 (45.16%), Postives = 128/217 (58.99%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDA------GDADADMPPLEDAADDAEGSKMEEVD 836
            V+YM + IDEY +  LKE++GK+LVS T                         LCK++K +L               SPCC+VT ++GW+ANMERIMKAQALRD +  GYM+ KK +EINP++PI+E LR++ADADKNDK+VKD          L+SGFSLD P    +RI+RM+KLGL I+ED         +  D P L +  +DA  S MEEVD
Sbjct:  503 VVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDEAEKKKREEDKAKFEGLCKLMKSILDSKVEKVVVSNRLVDSPCCIVTSQFGWSANMERIMKAQALRDTATMGYMAGKKQLEINPDHPIVEALRQKADADKNDKAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGIDEDEPMTTEDAHSGGDAPGLVEDTEDA--SHMEEVD 717          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP85_TRYCR (Heat shock-like 85 kDa protein OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.874e-43
Identity = 97/212 (45.75%), Postives = 128/212 (60.38%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSI-EEDAGDADADMPPLEDAADDAEGSKMEEVD 836
            VL+M + IDEY + Q+K+FE KK    T                         LCK +KDVLG              SPC LVT E+GW+A+ME+IM+ QALRD+SM+ YM SKKTMEINP +PI++EL++R +AD+NDK+VKD          LTSGF+LDDP ++  RIHRM+KLGLS+ +ED G+ +A+      A   A  S ME+VD
Sbjct:  493 VLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEETEEEKKQREEEKTAYERLCKAMKDVLGDKVEKVVVSERLATSPCILVTSEFGWSAHMEQIMRNQALRDSSMSAYMMSKKTMEINPAHPIVKELKRRVEADENDKAVKDLVYLLFDTALLTSGFTLDDPTSYAERIHRMIKLGLSLDDEDNGNEEAEPAAAVPAEPVAGTSSMEQVD 704          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP83_DROAV (Heat shock protein 83 OS=Drosophila auraria GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.631e-43
Identity = 97/217 (44.70%), Postives = 127/217 (58.53%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDA------GDADADMPPLEDAADDAEGSKMEEVD 836
            V+YM + IDEY +  LKE++GK+LVS T                         LCK++  +L               SPCC+VT ++GW+ANMERIMKAQALRD +  GYM+ KK +EINP++PI+E LR++ADADKNDK+VKD          L+SGFSLD P    +RI+RM+KLGL I+ED         +  D P L +  +DA  S MEEVD
Sbjct:  502 VVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDDAEKKKREEDKAKFESLCKLMNAILDNKVEKVVVSNRLVDSPCCIVTSQFGWSANMERIMKAQALRDTATMGYMAGKKQLEINPDHPIVETLRQKADADKNDKAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGIDEDEPMTTEDAQSAGDAPSLVEDTEDA--SHMEEVD 716          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP90_SCHPO (Heat shock protein 90 homolog OS=Schizosaccharomyces pombe GN=swo1 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.923e-42
Identity = 98/212 (46.23%), Postives = 127/212 (59.91%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADAD-KNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLEDAADDAEGSKMEEVD 836
            VL+MVD IDEYAV QLKEFEGKKLV+ T                           K +K +LG              SPC L TG+YGW+ANMERIMKAQALRD SM+ YMSS+KT EINP++PI+ EL+K+ + +   D+SVKD          L+SGF+LDDP+ +  RI+R++ LGLSI+E+      ++     AA++   SKMEEVD
Sbjct:  493 VLFMVDPIDEYAVTQLKEFEGKKLVNITKDGLELEETDEEKAAREKLEKEYEEFAKQLKTILGDKVEKVVVSNKIVGSPCLLTTGQYGWSANMERIMKAQALRDTSMSAYMSSRKTFEINPKSPIIAELKKKVEENGAEDRSVKDLATILYETALLSSGFTLDDPSAYAQRINRLISLGLSIDEEEEAPIEEISTESVAAENNAESKMEEVD 704          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP90_PLAFP (Heat shock 90 kDa protein homolog (Fragment) OS=Plasmodium falciparum (isolate Palo Alto / Uganda) PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.511e-42
Identity = 99/195 (50.77%), Postives = 119/195 (61.03%), Query Frame = -1
Query:  204 KEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLEDAADDAEGSKMEEVD 788
            K+F+GKKL   T                         LCKVIKDVL               SPC LVT E+GW+ANMERIMKAQALRDNSM  YM SKK MEIN  +PI+  L+++ADADK+DK+VK           LTSGF+L++P TF  RIHRM+KLGLSI+E+  + D D+PPLE+   DA  SKMEEVD
Sbjct:    1 KDFDGKKLKCCTKEGLDIHHSEEAKKDFETLKAEYEGLCKVIKDVLHKKVEKVVVGQRITDSPCVLVTSEFGWSANMERIMKAQALRDNSMTSYMLSKKIMEINARHPIISALKQKADADKSDKTVKYLIWLLFDTSLLTSGFALEEPTTFSKRIHRMIKLGLSIDEEENN-DIDLPPLEETV-DATDSKMEEVD 193          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP83_TRYBB (Heat shock protein 83 OS=Trypanosoma brucei brucei GN=HSP83 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.283e-42
Identity = 93/211 (44.08%), Postives = 123/211 (58.29%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLEDAADDAEGSKMEEVD 836
            VL+M D IDEY + Q+K+FE KK    T                         LCK +K+VLG              SPC LVT E+GW+A+ME+IM+ QALRD+SM+ YM  KKTMEIN  + I++EL++R +AD+NDK+ KD          LTSGF+LDDP  + +RIHRM+KLGLS+++DA + +A  P    A      S MEEVD
Sbjct:  493 VLFMTDPIDEYVMQQVKDFEDKKFACLTKEGVHFEETEEEKKQREEEKASYERLCKAMKEVLGDKVEKVVVSDRLATSPCILVTSEFGWSAHMEQIMRNQALRDSSMSAYMMRKKTMEINTTHAIVKELKRRVEADENDKAAKDLIFLLFDTSLLTSGFTLDDPTAYADRIHRMIKLGLSLDDDAEEEEAQAPVAAAANSSTGASGMEEVD 703          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP83_LEIIN (Heat shock protein 83-1 OS=Leishmania infantum GN=HSP83-1 PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 4.736e-41
Identity = 96/213 (45.07%), Postives = 125/213 (58.69%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSI--EEDAGDADADMPPLEDAADDAEGSKMEEVD 836
            VL+M + IDEY + Q+K+FE KK    T                         LCK +K+VLG              SPC LVT E+GW+A+ME+IM+ QALRD+SMA YM SKKTME+NP +PI++ELR+R DAD+NDK+VKD          LTSGF L+DP  +  RI+RM+KLGLS+  EE+   A+A +     A   A  S ME+VD
Sbjct:  489 VLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSECLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVDADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEVVAAEATVAETAPAEVTAGTSSMEQVD 701          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP83_LEIDO (Heat shock protein 83 (Fragment) OS=Leishmania donovani GN=HSP83 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.838e-40
Identity = 89/211 (42.18%), Postives = 122/211 (57.82%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLEDAADDAEGSKMEEVD 836
            VL+M + IDEY + Q+K+FE KK    T                          CK +K+VLG              SPC LVT E+GW+A+ME+IM+ QA+RD+SM+ YM SKKTME+NP +PI++ LR+R +AD+NDK+VKD          LTSGF L+DP  +  RI+RM+KLGLS++E+   A+A +     A      S ME+VD
Sbjct:  242 VLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKRCKTMKEVLGDKVEKVTVSDRLSTSPCILVTSEFGWSAHMEQIMRNQAVRDSSMSAYMMSKKTMELNPRHPIIKVLRRRVEADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAKRINRMIKLGLSLDEEEEAAEATVVETAPAEVTVGTSSMEQVD 452          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HSP90_PODAN (Heat shock protein 90 homolog OS=Podospora anserina GN=MOD-E PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.789e-39
Identity = 93/214 (43.46%), Postives = 130/214 (60.75%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADAD-KNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLED--AADDAEGSKMEEVD 836
            VL++VD IDEYA+ QLKEFEGKKLV  T                           K +K+VLG              +PC + TG++GW+ANMERIMKAQALRD SM+ YMSSKKT EI+P++PI++EL+++ +AD +NDK+VK           L SGF++++P  F  RIH+++ LGL+++E+  +A AD P  +   AA +   + MEEVD
Sbjct:  490 VLFLVDPIDEYAMTQLKEFEGKKLVDITKDFELEETEEEKKQREAEEKEYDGL-AKALKNVLGDKVEKVVVSHKLVGAPCAIRTGQFGWSANMERIMKAQALRDTSMSSYMSSKKTFEISPKSPIIKELKQKVEADGENDKTVKSIVQLLFETSLLVSGFTIEEPAGFAERIHKLVALGLNLDEEP-EAAADAPAADAGVAAAETSDNAMEEVD 701          
The following BLAST results are available for this feature:
BLAST of CX070056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
HSP83_DROME1.020e-4346.08Heat shock protein 83 OS=Drosophila melanogaster G... [more]
HSP83_DROPS1.739e-4345.16Heat shock protein 83 OS=Drosophila pseudoobscura ... [more]
HSP85_TRYCR3.874e-4345.75Heat shock-like 85 kDa protein OS=Trypanosoma cruz... [more]
HSP83_DROAV8.631e-4344.70Heat shock protein 83 OS=Drosophila auraria GN=Hsp... [more]
HSP90_SCHPO1.923e-4246.23Heat shock protein 90 homolog OS=Schizosaccharomyc... [more]
HSP90_PLAFP2.511e-4250.77Heat shock 90 kDa protein homolog (Fragment) OS=Pl... [more]
HSP83_TRYBB4.283e-4244.08Heat shock protein 83 OS=Trypanosoma brucei brucei... [more]
HSP83_LEIIN4.736e-4145.07Heat shock protein 83-1 OS=Leishmania infantum GN=... [more]
HSP83_LEIDO6.838e-4042.18Heat shock protein 83 (Fragment) OS=Leishmania don... [more]
HSP90_PODAN5.789e-3943.46Heat shock protein 90 homolog OS=Podospora anserin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14E05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14E05-I10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070056 ID=CX070056; Name=CX070056; organism=Citrus sinensis; type=EST; length=836bp
CTTTTTTTTTTGATTCGGAAACAGCATACTTTTTAAGCATTTGCAAAACA
ATAAAACAAAACCTCCACCAAAGAGGGAAAATAAAAATATAAAAGCACTA
CTCCCACAGTACTACCACCACAGAACGCATAACAAAAAGAAACTACCTAG
TTAAAAGAGTTTCATGAAAAAAGACTACTATAGCAGACTATTATAGCTTC
TTAATCAACTTCCTCCATCTTGCTGCCCTCAGCATCGTCAGCAGCATCCT
CCAATGGTGGCATGTCAGCATCAGCATCACCAGCATCCTCCTCGATGCTC
AGCCCGAGTTTCAACATCCTGTGGATTCTGTTGCCGAAAGTGTTAGGGTC
ATCAAGGCTGAAACCAGAAGTGAGGAGAGCAGTCTCAAAGAGCAGAAGGA
CAAGGTCCTTCACAGACTTGTCATTCTTGTCAGCATCAGCCCTCTTCCTG
AGCTCCTCCATGATGGGGTTCTCCGGATTGATCTCCATGGTCTTCTTGCT
GGACATGTAACCAGCCATGCTGTTGTCTCTCAAGGCCTGAGCCTTCATGA
TCCTCTCCATGTTGGCTGTCCATCCATACTCACCAGTCACCAAACAGCAG
GGTGAGTCAACAACACGGTCAGACACCACAACCTTCTCGACCTTGTCACC
CAAAACATCCTTGATCACCTTGCAGAGACCCTCAAATTTCTCCTTCAAGG
TTTCCTTCTTCTTCTTCTCATCTTCACTCTCGTCAAGCTTGAGACCTTCT
TTGGTTGCTGAGACAAGCTTCTTTCCCTCAAACTCCTTGAGCTGACCAAC
AGCGTACTCATCTATGGCATCAACCATGTAGAGCAC
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