CX070056

Overview
NameCX070056
Unique NameCX070056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: ENPL_CATRO (Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.444e-21
Identity = 53/136 (38.97%), Postives = 79/136 (58.09%), Query Frame = -1
Query:  219 PCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSI--------EEDAGDADADMPPLEDAADDAEGSK 602
            PC +VT +YGW++NMERIM++Q L D S   YM  K+ +EINP +PI++ELR+R   D  D+SVK           + SGF L+DP  F + I+  +K  L I        E+D  +A+A+    E +A +  G++
Sbjct:  674 PCVVVTSKYGWSSNMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDAEDESVKQTARLMYQTALMESGFMLNDPKEFASSIYDSVKSSLKISPDATVEEEDDTEEAEAESGTTESSAAEDAGAE 809          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: ENPL_HORVU (Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.213e-20
Identity = 63/217 (29.03%), Postives = 101/217 (46.54%), Query Frame = -1
Query:  204 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAG---DADADMPPLED---AADDAEGSKMEEVD 836
            V+Y  D +DEY +  L ++E KK  + +                           K + D  G               PC +VT +YGW++NME+IM+AQ L D S   YM  K+ +EINP +PI++ELR +   D + + +K           + SGF+L DP  F + I+R ++  L +  DA    + + + P +E+   A  +AE  + E+ D
Sbjct:  592 VIYFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKLKDLKESFKELTDWWKKAL-DTEGIDSVKISNRLHNT--PCVVVTSKYGWSSNMEKIMQAQTLSDASKQAYMRGKRVLEINPRHPIIKELRDKVAQDSDSEGLKQTARLVYQTALMESGFNLPDPKDFASSIYRSVQKSLDLSPDAAVEEEEEVEEPEVEEKESAKQEAEEPEHEQYD 805          
BLAST of CX070056 vs. ExPASy Swiss-Prot
Match: HTPG_MYXXD (Chaperone protein htpG OS=Myxococcus xanthus (strain DK 1622) GN=htpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.537e-12
Identity = 53/175 (30.29%), Postives = 76/175 (43.43%), Query Frame = -1
Query:  312 VLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXLCKVIKDVLGXXXXXXXXXXXXXXSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRML 836
            VLYM D +DE+A   L+EF+GK LVSA                          L   +KDVL               SP CLV  E G  A +ER+++ +       AG    K+ +E+NP++P++E L+   D D     V +          LT G ++ DPN F  R+  +L
Sbjct:  462 VLYMTDPVDEWAAQGLREFQGKPLVSALQADLKLQSTDEQKKEQEQHAEGLKTLTSKMKDVLQESVREVRVSDRLTDSPVCLVVPEGGSPAYLERLLQQR----GRGAGMPRVKRILEVNPKHPVIEHLKAVHDRDPAAAQVAEWIELLHDQALLTEGSTIADPNRFARRMTGLL 632          
The following BLAST results are available for this feature:
BLAST of CX070056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ENPL_CATRO5.444e-2138.97Endoplasmin homolog OS=Catharanthus roseus GN=HSP9... [more]
ENPL_HORVU1.213e-2029.03Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1[more]
HTPG_MYXXD3.537e-1230.29Chaperone protein htpG OS=Myxococcus xanthus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14E05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14E05-I10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070056 ID=CX070056; Name=CX070056; organism=Citrus sinensis; type=EST; length=836bp
CTTTTTTTTTTGATTCGGAAACAGCATACTTTTTAAGCATTTGCAAAACA
ATAAAACAAAACCTCCACCAAAGAGGGAAAATAAAAATATAAAAGCACTA
CTCCCACAGTACTACCACCACAGAACGCATAACAAAAAGAAACTACCTAG
TTAAAAGAGTTTCATGAAAAAAGACTACTATAGCAGACTATTATAGCTTC
TTAATCAACTTCCTCCATCTTGCTGCCCTCAGCATCGTCAGCAGCATCCT
CCAATGGTGGCATGTCAGCATCAGCATCACCAGCATCCTCCTCGATGCTC
AGCCCGAGTTTCAACATCCTGTGGATTCTGTTGCCGAAAGTGTTAGGGTC
ATCAAGGCTGAAACCAGAAGTGAGGAGAGCAGTCTCAAAGAGCAGAAGGA
CAAGGTCCTTCACAGACTTGTCATTCTTGTCAGCATCAGCCCTCTTCCTG
AGCTCCTCCATGATGGGGTTCTCCGGATTGATCTCCATGGTCTTCTTGCT
GGACATGTAACCAGCCATGCTGTTGTCTCTCAAGGCCTGAGCCTTCATGA
TCCTCTCCATGTTGGCTGTCCATCCATACTCACCAGTCACCAAACAGCAG
GGTGAGTCAACAACACGGTCAGACACCACAACCTTCTCGACCTTGTCACC
CAAAACATCCTTGATCACCTTGCAGAGACCCTCAAATTTCTCCTTCAAGG
TTTCCTTCTTCTTCTTCTCATCTTCACTCTCGTCAAGCTTGAGACCTTCT
TTGGTTGCTGAGACAAGCTTCTTTCCCTCAAACTCCTTGAGCTGACCAAC
AGCGTACTCATCTATGGCATCAACCATGTAGAGCAC
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