CX070010

Overview
NameCX070010
Unique NameCX070010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070010 vs. ExPASy Swiss-Prot
Match: NTRK2_CHICK (BDNF/NT-3 growth factors receptor OS=Gallus gallus GN=NTRK2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.860e-23
Identity = 72/218 (33.03%), Postives = 110/218 (50.46%), Query Frame = -2
Query:  237 NVVQFIGACTRPPRLFIVTEFMSGGSIYDYLH------------KQKCGLKLPLLLRVAIDVSKGMNYLHRNNIIHRDLKAANLLMNENGVVKVADFGVAR---VQAQYGVMTAETGTYRWMAPEVIEHQPYNHRADVFSFGIVLWELVT-GKLPYDDLTPLQAAVGVVQKGL--RP-TIPVHTHPILVDLLERCWQRDPSLRPDFSEITELLQHLAQ 833
            ++V+F G C     L +V E+M  G +  +L              +   L    +L +A  ++ GM YL   + +HRDL   N L+ EN +VK+ DFG++R       Y V        RWM PE I ++ +   +DV+S G+VLWE+ T GK P+  L+  +    + Q  +  RP T P   +    DL+  CWQR+P +R +  EI  LLQ+LA+
Sbjct:  595 HIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTCPKEVY----DLMLGCWQREPHMRLNIKEIHSLLQNLAK 808          
BLAST of CX070010 vs. ExPASy Swiss-Prot
Match: KIT_PIG (Mast/stem cell growth factor receptor OS=Sus scrofa GN=KIT PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.860e-23
Identity = 59/169 (34.91%), Postives = 89/169 (52.66%), Query Frame = -2
Query:  249 LHKQKCGLKLPLLLRVAIDVSKGMNYLHRNNIIHRDLKAANLLMNENGVVKVADFGVAR---VQAQYGVMTAETGTYRWMAPEVIEHQPYNHRADVFSFGIVLWELVT-GKLPYDDLTPLQAAVGVVQKGLRPTIPVHTHPILVDLLERCWQRDPSLRPDFSEITELLQ 743
            +   +  L L  LL  +  V+KGM +L   N IHRDL A N+L+    + K+ DFG+AR     + Y V        +WMAPE I +  Y   +DV+S+GI LWEL + G  PY  +        ++++G R   P H    + D+++ CW  DP  RP F +I +L++
Sbjct:  753 MEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIE 921          
BLAST of CX070010 vs. ExPASy Swiss-Prot
Match: KIT_HUMAN (Mast/stem cell growth factor receptor OS=Homo sapiens GN=KIT PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.860e-23
Identity = 59/169 (34.91%), Postives = 89/169 (52.66%), Query Frame = -2
Query:  249 LHKQKCGLKLPLLLRVAIDVSKGMNYLHRNNIIHRDLKAANLLMNENGVVKVADFGVAR---VQAQYGVMTAETGTYRWMAPEVIEHQPYNHRADVFSFGIVLWELVT-GKLPYDDLTPLQAAVGVVQKGLRPTIPVHTHPILVDLLERCWQRDPSLRPDFSEITELLQ 743
            +   +  L L  LL  +  V+KGM +L   N IHRDL A N+L+    + K+ DFG+AR     + Y V        +WMAPE I +  Y   +DV+S+GI LWEL + G  PY  +        ++++G R   P H    + D+++ CW  DP  RP F +I +L++
Sbjct:  757 MEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIE 925          
BLAST of CX070010 vs. ExPASy Swiss-Prot
Match: KIT_FELCA (Mast/stem cell growth factor receptor OS=Felis catus GN=KIT PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.860e-23
Identity = 59/169 (34.91%), Postives = 89/169 (52.66%), Query Frame = -2
Query:  249 LHKQKCGLKLPLLLRVAIDVSKGMNYLHRNNIIHRDLKAANLLMNENGVVKVADFGVAR---VQAQYGVMTAETGTYRWMAPEVIEHQPYNHRADVFSFGIVLWELVT-GKLPYDDLTPLQAAVGVVQKGLRPTIPVHTHPILVDLLERCWQRDPSLRPDFSEITELLQ 743
            +   +  L L  LL  +  V+KGM +L   N IHRDL A N+L+    + K+ DFG+AR     + Y V        +WMAPE I +  Y   +DV+S+GI LWEL + G  PY  +        ++++G R   P H    + D+++ CW  DP  RP F +I +L++
Sbjct:  758 MEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIE 926          
BLAST of CX070010 vs. ExPASy Swiss-Prot
Match: KIT_CHICK (Mast/stem cell growth factor receptor OS=Gallus gallus GN=KIT PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.860e-23
Identity = 59/169 (34.91%), Postives = 92/169 (54.44%), Query Frame = -2
Query:  249 LHKQKCGLKLPLLLRVAIDVSKGMNYLHRNNIIHRDLKAANLLMNENGVVKVADFGVA---RVQAQYGVMTAETGTYRWMAPEVIEHQPYNHRADVFSFGIVLWELVT-GKLPYDDLTPLQAAVGVVQKGLRPTIPVHTHPILVDLLERCWQRDPSLRPDFSEITELLQ 743
            L   +  L +  LL  +  V+KGM++L   N IHRDL A N+L+    + K+ DFG+A   R  + Y V        +WMAPE I +  Y   +DV+S+GI+LWEL + G  PY  +        ++++G R   P  + P + D+++ CW  DP  RP F +I +L++
Sbjct:  742 LEDDELALDVEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWELFSLGSSPYPGMPVDSKFYKMIKEGYRMFSPECSPPEMYDIMKSCWDADPLQRPTFKQIVQLIE 910          
BLAST of CX070010 vs. ExPASy Swiss-Prot
Match: KIT_CAPHI (Mast/stem cell growth factor receptor OS=Capra hircus GN=KIT PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.860e-23
Identity = 59/169 (34.91%), Postives = 89/169 (52.66%), Query Frame = -2
Query:  249 LHKQKCGLKLPLLLRVAIDVSKGMNYLHRNNIIHRDLKAANLLMNENGVVKVADFGVAR---VQAQYGVMTAETGTYRWMAPEVIEHQPYNHRADVFSFGIVLWELVT-GKLPYDDLTPLQAAVGVVQKGLRPTIPVHTHPILVDLLERCWQRDPSLRPDFSEITELLQ 743
            +   +  L L  LL  +  V+KGM +L   N IHRDL A N+L+    + K+ DFG+AR     + Y V        +WMAPE I +  Y   +DV+S+GI LWEL + G  PY  +        ++++G R   P H    + D+++ CW  DP  RP F +I +L++
Sbjct:  759 MEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIE 927          
BLAST of CX070010 vs. ExPASy Swiss-Prot
Match: KIT_CANFA (Mast/stem cell growth factor receptor OS=Canis familiaris GN=KIT PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 9.860e-23
Identity = 59/169 (34.91%), Postives = 89/169 (52.66%), Query Frame = -2
Query:  249 LHKQKCGLKLPLLLRVAIDVSKGMNYLHRNNIIHRDLKAANLLMNENGVVKVADFGVAR---VQAQYGVMTAETGTYRWMAPEVIEHQPYNHRADVFSFGIVLWELVT-GKLPYDDLTPLQAAVGVVQKGLRPTIPVHTHPILVDLLERCWQRDPSLRPDFSEITELLQ 743
            +   +  L L  LL  +  V+KGM +L   N IHRDL A N+L+    + K+ DFG+AR     + Y V        +WMAPE I +  Y   +DV+S+GI LWEL + G  PY  +        ++++G R   P H    + D+++ CW  DP  RP F +I +L++
Sbjct:  760 MEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIE 928          
BLAST of CX070010 vs. ExPASy Swiss-Prot
Match: KIT_CALJA (Mast/stem cell growth factor receptor OS=Callithrix jacchus GN=KIT PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.860e-23
Identity = 59/169 (34.91%), Postives = 89/169 (52.66%), Query Frame = -2
Query:  249 LHKQKCGLKLPLLLRVAIDVSKGMNYLHRNNIIHRDLKAANLLMNENGVVKVADFGVAR---VQAQYGVMTAETGTYRWMAPEVIEHQPYNHRADVFSFGIVLWELVT-GKLPYDDLTPLQAAVGVVQKGLRPTIPVHTHPILVDLLERCWQRDPSLRPDFSEITELLQ 743
            +   +  L L  LL  +  V+KGM +L   N IHRDL A N+L+    + K+ DFG+AR     + Y V        +WMAPE I +  Y   +DV+S+GI LWEL + G  PY  +        ++++G R   P H    + D+++ CW  DP  RP F +I +L++
Sbjct:  753 MEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIE 921          
BLAST of CX070010 vs. ExPASy Swiss-Prot
Match: KIT_BOVIN (Mast/stem cell growth factor receptor OS=Bos taurus GN=KIT PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.860e-23
Identity = 59/169 (34.91%), Postives = 89/169 (52.66%), Query Frame = -2
Query:  249 LHKQKCGLKLPLLLRVAIDVSKGMNYLHRNNIIHRDLKAANLLMNENGVVKVADFGVAR---VQAQYGVMTAETGTYRWMAPEVIEHQPYNHRADVFSFGIVLWELVT-GKLPYDDLTPLQAAVGVVQKGLRPTIPVHTHPILVDLLERCWQRDPSLRPDFSEITELLQ 743
            +   +  L L  LL  +  V+KGM +L   N IHRDL A N+L+    + K+ DFG+AR     + Y V        +WMAPE I +  Y   +DV+S+GI LWEL + G  PY  +        ++++G R   P H    + D+++ CW  DP  RP F +I +L++
Sbjct:  758 MEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIE 926          
BLAST of CX070010 vs. ExPASy Swiss-Prot
Match: KIN16_CAEEL (Receptor-like tyrosine-protein kinase kin-16 OS=Caenorhabditis elegans GN=kin-16 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.860e-23
Identity = 60/171 (35.09%), Postives = 90/171 (52.63%), Query Frame = -2
Query:  258 DYLHKQKC-GLKLPLLLRVAIDVSKGMNYLHRNNIIHRDLKAANLLMNENGVVKVADFGVARVQAQYGVMTAETG-----TYRWMAPEVIEHQPYNHRADVFSFGIVLWELVT-GKLPYDDLTPLQAAVGVVQKGLRPTIPVHTHPILVDLLERCWQRDPSLRPDFSEITE 749
            DY+ K+    L    LL   + ++ GM YL    ++HRDL   N+L+ +N  +++ADFG+AR          +         RWM+PE  +   +  ++DV+SFGI L+E+ T G+LPY D+ P +     +  G R   P H H  L DL++ CW   P LRP+FS   E
Sbjct:  283 DYVIKESLDSLTTSDLLSFGLQIANGMQYLASIPMVHRDLALRNVLLKKNKTIRIADFGMARTHENKSYYIPQKTKDAPVPVRWMSPEAFDTMKFTEKSDVWSFGICLYEIFTLGQLPYPDV-PSERIYEYMHSGRRCPQPQHCHVELYDLMKLCWHEKPELRPNFSNCVE 452          
The following BLAST results are available for this feature:
BLAST of CX070010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NTRK2_CHICK9.860e-2333.03BDNF/NT-3 growth factors receptor OS=Gallus gallus... [more]
KIT_PIG9.860e-2334.91Mast/stem cell growth factor receptor OS=Sus scrof... [more]
KIT_HUMAN9.860e-2334.91Mast/stem cell growth factor receptor OS=Homo sapi... [more]
KIT_FELCA9.860e-2334.91Mast/stem cell growth factor receptor OS=Felis cat... [more]
KIT_CHICK9.860e-2334.91Mast/stem cell growth factor receptor OS=Gallus ga... [more]
KIT_CAPHI9.860e-2334.91Mast/stem cell growth factor receptor OS=Capra hir... [more]
KIT_CANFA9.860e-2334.91Mast/stem cell growth factor receptor OS=Canis fam... [more]
KIT_CALJA9.860e-2334.91Mast/stem cell growth factor receptor OS=Callithri... [more]
KIT_BOVIN9.860e-2334.91Mast/stem cell growth factor receptor OS=Bos tauru... [more]
KIN16_CAEEL9.860e-2335.09Receptor-like tyrosine-protein kinase kin-16 OS=Ca... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14C04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C04-E8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070010 ID=CX070010; Name=CX070010; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTGACACAAGCATCCAGTATCATTACTTTTAGCCTATACAAATCT
TATATAAGAAAACAAAAACTCCCGTCAGACAAATTTTCCTTCCTTAGCAA
CAGAAAAAAGCATCATATACTCCGATTCTATGAACTATACTTCACTTTCT
TGTTACCCCAGGAGCTGTCTTGCTAAATACTATTACCGCTCTTCAATAGC
ATTTCCTTGTGCTAGTCCTCTCTTTGTCTGCAACCTTTGGGCCAAGTGCT
GTAGAAGTTCTGTAATTTCAGAGAAATCAGGTCTCAAAGATGGGTCTCGT
TGCCAGCATCTCTCAAGCAAATCCACTAGTATAGGATGAGTATGCACAGG
AATCGTAGGCCTAAGACCCTTCTGAACCACTCCAACTGCAGCTTGTAATG
GGGTCAAATCATCATATGGAAGCTTTCCTGTAACAAGCTCCCATAGCACA
ATCCCGAAACTGAAAACATCGGCTCTGTGATTATATGGTTGGTGTTCAAT
TACCTCTGGAGCCATCCAACGGTACGTTCCAGTTTCCGCGGTCATCACAC
CATATTGAGCTTGAACTCTGGCAACACCAAAATCAGCAACCTTGACAACT
CCATTCTCATTCATCAAAAGATTGGCCGCTTTCAGGTCCCTATGGATTAT
ATTGTTTCTGTGCAAGTAATTCATTCCCTTGGAAACATCAATGGCAACTC
TGAGTAGCAAAGGAAGCTTTAAACCGCACTTTTGTTTATGCAGGTAGTCA
TAGATGCTTCCACCAGACATAAATTCAGTCACAATGAACAGCCTTGGAGG
TCTAGTACATGCACCAATGAATTGAACGACATTC
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