CX070009

Overview
NameCX070009
Unique NameCX070009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4323 contig Csv1_Contig4323:1..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070009 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.456e-11
Identity = 45/136 (33.09%), Postives = 70/136 (51.47%), Query Frame = -2
Query:  159 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS*KIYAERDGR 566
            GH + I S+  SP+G ++AS   D  I++W    G+C   L GH+  +  +A+S + S L S S D T+KLWDV           +SG    + LKTL   S  V+   F+  + L  +G+  + S KI+  + G+
Sbjct:   37 GHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWDV-----------RSG----KCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDE-SVKIWEVKTGK 156          
BLAST of CX070009 vs. ExPASy Swiss-Prot
Match: MDV1_VANPO (Mitochondrial division protein 1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MDV1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-11
Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = -2
Query:  132 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS*KIYAERDGRVQQQQCRQS 515
            +A+G  DG + +WD+ SG+ V   MGHT+ V +L +  +   L SGS D +++ WD+ T                 SL  L    +PVYS+ F   NL+ A G   +TS K+Y  +D +  Q +C  S
Sbjct:  571 LATGTRDGLVRLWDMRSGKVVRTFMGHTNAVTSLKF--DSYNLISGSLDKSIRTWDLRTG----------------SLSDLFAYDSPVYSIDFDSSNLVSAIG---ETSFKVYNRKDDK--QWECVNS 675          
BLAST of CX070009 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.601e-11
Identity = 36/102 (35.29%), Postives = 52/102 (50.98%), Query Frame = -2
Query:  261 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 566
            GH   +  +  SPDG+++ +  ED TI +WDL  G+       HT  V  + +     LLASGS+D TV+ WD+ T   V  T    G + +RS+   P  S
Sbjct:  141 GHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTGIEFHPNEFLLASGSSDRTVQFWDLETFQLVSST--SPGASAVRSISFHPDGS 240          
BLAST of CX070009 vs. ExPASy Swiss-Prot
Match: WDR38_MOUSE (WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = -2
Query:  306 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS--TKVLKTEEKS 581
            VR +  H   +   A SPDGR + +  +DG + +W   SGR +  L GH   V +  +S +G L+AS S+D +++LWDV  S    VLK  ++S
Sbjct:   19 VRFYGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRS 112          
BLAST of CX070009 vs. ExPASy Swiss-Prot
Match: LIS1A_DANRE (Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1b1a PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 42/133 (31.58%), Postives = 68/133 (51.13%), Query Frame = -2
Query:  183 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS*K 581
            +R   GH   + S+A+ P+G ++ S   D TI MW++A+G CV    GH   V  +  + +G+L+AS S D TV++W V  +TK  K E +   + +  +   P  + P          +L A G+ +K S K
Sbjct:  185 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMVRPNQDGTLIASSSNDQTVRVWVV--ATKECKAELREHEHVVECISWAPESAHP---------TILEATGSETKKSGK 306          
The following BLAST results are available for this feature:
BLAST of CX070009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
WDR5B_RAT4.456e-1133.09WD repeat-containing protein 5B OS=Rattus norvegic... [more]
MDV1_VANPO5.820e-1133.59Mitochondrial division protein 1 OS=Vanderwaltozym... [more]
KTNB1_STRPU7.601e-1135.29Katanin p80 WD40-containing subunit B1 OS=Strongyl... [more]
WDR38_MOUSE9.927e-1137.23WD repeat-containing protein 38 OS=Mus musculus GN... [more]
LIS1A_DANRE9.927e-1131.58Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_14C03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C03-E6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070009 ID=CX070009; Name=CX070009; organism=Citrus sinensis; type=EST; length=582bp
TTTTTTTTTTTTTTTTGACTAGCAAAATCATCAAATCATCTTTCTCGTTT
CTTAAATACGTGTTACAAATATAGAACACAGAAAGTTATCAAGCCCAAAT
GGGGACAAAGGATTCTGATTTTACATCCAAGACTTTGCCTGCACTGCTGT
TGTTGAACTCGCCCATCCCGCTCAGCATAAATCTTCTATGAAGTTTTTGA
GAGAGCCCCCGCAGCAAATAGGAGATTTCTTCGAGAAAACTGTAAAGAAT
AGACTGGCGTCGACTTGGTTGGCAGAGTTTTCAACGATCTCAGTCTGTTT
GTTCCACTCTTCTCTTCGGTTTTCAGCACCTTCGTGCTAGTAGTGACATC
CCATAATTTTACGGTGCAATCAGCAGATCCAGATGCGAGAAGCGAACCTT
CACAACTGTAGGCTAGTGTCCACACGCATGAGGTGTGACCCATCAAAGGG
GTGACACAACGACCACTAGCAAGATCCCACATCATGATCGTGCCATCTTC
ATCACCAGATGCCATGTACCGACCATCGGGTGACATTGCTAATGACAAAA
TCATACTCCTATGTCCAATAAAAATCCGGACA
back to top