CX070009
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070009 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.456e-11 Identity = 45/136 (33.09%), Postives = 70/136 (51.47%), Query Frame = -2 Query: 159 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS*KIYAERDGR 566 GH + I S+ SP+G ++AS D I++W G+C L GH+ + +A+S + S L S S D T+KLWDV +SG + LKTL S V+ F+ + L +G+ + S KI+ + G+ Sbjct: 37 GHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWDV-----------RSG----KCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDE-SVKIWEVKTGK 156
BLAST of CX070009 vs. ExPASy Swiss-Prot
Match: MDV1_VANPO (Mitochondrial division protein 1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MDV1 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-11 Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = -2 Query: 132 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS*KIYAERDGRVQQQQCRQS 515 +A+G DG + +WD+ SG+ V MGHT+ V +L + + L SGS D +++ WD+ T SL L +PVYS+ F NL+ A G +TS K+Y +D + Q +C S Sbjct: 571 LATGTRDGLVRLWDMRSGKVVRTFMGHTNAVTSLKF--DSYNLISGSLDKSIRTWDLRTG----------------SLSDLFAYDSPVYSIDFDSSNLVSAIG---ETSFKVYNRKDDK--QWECVNS 675
BLAST of CX070009 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.601e-11 Identity = 36/102 (35.29%), Postives = 52/102 (50.98%), Query Frame = -2 Query: 261 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 566 GH + + SPDG+++ + ED TI +WDL G+ HT V + + LLASGS+D TV+ WD+ T V T G + +RS+ P S Sbjct: 141 GHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTGIEFHPNEFLLASGSSDRTVQFWDLETFQLVSST--SPGASAVRSISFHPDGS 240
BLAST of CX070009 vs. ExPASy Swiss-Prot
Match: WDR38_MOUSE (WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11 Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = -2 Query: 306 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS--TKVLKTEEKS 581 VR + H + A SPDGR + + +DG + +W SGR + L GH V + +S +G L+AS S+D +++LWDV S VLK ++S Sbjct: 19 VRFYGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRS 112
BLAST of CX070009 vs. ExPASy Swiss-Prot
Match: LIS1A_DANRE (Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1b1a PE=2 SV=3) HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11 Identity = 42/133 (31.58%), Postives = 68/133 (51.13%), Query Frame = -2 Query: 183 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS*K 581 +R GH + S+A+ P+G ++ S D TI MW++A+G CV GH V + + +G+L+AS S D TV++W V +TK K E + + + + P + P +L A G+ +K S K Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMVRPNQDGTLIASSSNDQTVRVWVV--ATKECKAELREHEHVVECISWAPESAHP---------TILEATGSETKKSGK 306 The following BLAST results are available for this feature:
BLAST of CX070009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CX070009 ID=CX070009; Name=CX070009; organism=Citrus sinensis; type=EST; length=582bpback to top |